Gene Bphyt_1959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_1959 
Symbol 
ID6284779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp2205542 
End bp2207740 
Gene Length2199 bp 
Protein Length732 aa 
Translation table11 
GC content66% 
IMG OID642621525 
Productcapsular exopolysaccharide family 
Protein accessionYP_001895591 
Protein GI187923949 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis 
TIGRFAM ID[TIGR01007] capsular exopolysaccharide family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value0.901256 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGGTC CGATCAAGAC CGAAGAAGAG GACGTCGTCC TCGGACAACT GGTGCAGGTG 
ATCCTCGATG ACATCTGGTG GCTCATCGCC ATCGCCGCGG TGATCGTCGG GATCGCCGGC
GCTTATTGTT TTCTCGCCAA GCCGATCTAT TCGGCCGACG CGCATGTGCG GGTCGAGCAA
TCGGACAACA CGTCGCAGGC GCTCACGCAG ACGCAGACCG GCGCGGCGAT CACCACCGGC
TCGACCTCGT TGCCGACCGA CGCCGAGATC GAAATCATCA AGAGCCGCGG CGTGGTCGGC
CCGGTCGTGC AGCAACTGAA GCTGAACTTC AGCGTCACGC CGAAAACCTT CCCTCTGCTC
GGCAGCATCG CCGCGCGCAT GGCCACGCCG GGGCAACCCG CGCGTCCGTG GCTCGGTTTG
TCGTCGTATG CATGGGGCGG TGAAGAGGCC GACGTCGATT CGATCGACGT GATCCCCGCG
CTGGAAGGTC AGAAGCTCAC CATGAAGGCG ATCGACGACC AGCACTACAA CCTGTACGCC
GCGAACGGCT CGCTGCTGCT GCACGGCCAG GTCGGGCAGC AGGAGCAGGG CGGCGGCGTG
ACCATCACGG TCGACAAGCT GGTGGCCCGA CCGGGCGAGG AATTCACGGT GATGCGCGCC
AACGACCTCG ACGCGATCTC CGCGTTCCAG TCGGCCATCA CGGTGCAGGA GCAGGGCAAG
CAGACCGGCG TGATCCAGAT CTCGCTGGAA GACAAGAGCC CCGAACATGC CGCGCTCGTC
GCCAACGCGC TGGCGGAGTC GTATGTGCGC CAGCACGTGC TGAACAAGCA GGCCGACGCC
AGCAAGATGC TCGACTTCCT CAAGAGCGAG GAGCCGCGCC TGAAGTCCGA TCTGGAACGC
GCCGAGGCCG CGCTGACCGC GTATCAGCGC CAGTCCGGCT CGATCAACGC GAGCGACGAG
GCCAAGGTGT ACCTCGAAGG CAGCGTGCAG TACGAGCAGC AGATCGCAGG CCTTCGTCTG
CAGATGGCGC AGCTCACCGA GCGTTACGGC GACGACCATC CGATGCTCGT CGCCGCGCGT
GCGCAGATGG CCGAATTGCA GGCGCAGCGC ACCAAATACG CGGACCGCTT CCGCGATCTG
CCGGCCACCG AAGTGAAGGC CGTGCAGTTG CAGCGCGACG CGAAGGTGGC CGAAGACATC
TACGTGCTGC TGCTCAACCG CGTGCAGGAA CTGTCGGTGC AGAAGGCAGG CACCGGCGGC
AACGTGCATA TCGTCGACGC CGCGCTGCGC CCGGGCGTGC CGGTCAAGCC GAAGAAGGCG
CTGATTCTGT CGGCGGCGGT GATTCTCGGG CTGATCGCGG GCACGGGCTT CGTGTTCCTG
CGCCGCAATA TGTTCAAGGG CATCGACGAC CCGGATCACA TCGAGCGTGC CTTCCATTTG
CCGGTGTTCG GCCTCGTGCC GCTCTCCGCC GAACAGGGCG TGCTCGAAGC CGGCTTCCAG
CGCGGCGGCG AACGTCTACG CTCGGTGCTC GCGAACGCGC GGCCGAAGGA CGTCACGGTC
GAAAGCCTGC GCAGTCTGCG CACGTCCATG CAGTTCACGC TGATGGATGC GAAGAACCGC
ATTGTCATGC TGACGGGTCC GATGGCGGGC GTCGGCAAAA GCTTTCTCAC GGTCAACCTC
GCGGTGCTGC TCGCGAACTC CGGCAAGCGC GTGCTGATGA TCGACGGCGA CATGCGCCGC
GGCGTGCTCG AACGCTATCT GGGCGGTGCG CCGGATAACG GCCTGTCCGA ATTGTTGAGC
GGCCAGATTT CGCTGGAAGA AGCGATCCGC AGCTCGCAGG TCGACGGCCT GAGCTTCATC
TCGTGCGGCC GCCGTCCGCC GAATCCGTCG GAACTGCTGA TGTCGCCGCG TCTGCCGCAG
TACCTCGAAG GCCTCGCCAA GCGCTACGAC GTGATCATGA TCGACACGCC GCCGGTGCTG
GCCGTGACCG ATGCGTCGAT CATCGGCGCG TATGCCGGCT CGACCTTCTT CGTGATGCGC
TCGGGCATGC ACAGCGAGGG CGAGATCAAC GACGCGTTGA AGCGTCTGCG CGCGGCCGGC
GTGCACGTGC AGGGCGGCAT TTTCAACGGC ATGCCGGCGC GCTCGCGCGG CGGCTACGAC
CGTGGCTACG CGGCGGTGCA GGAATACCTG AGCACCTGA
 
Protein sequence
MAGPIKTEEE DVVLGQLVQV ILDDIWWLIA IAAVIVGIAG AYCFLAKPIY SADAHVRVEQ 
SDNTSQALTQ TQTGAAITTG STSLPTDAEI EIIKSRGVVG PVVQQLKLNF SVTPKTFPLL
GSIAARMATP GQPARPWLGL SSYAWGGEEA DVDSIDVIPA LEGQKLTMKA IDDQHYNLYA
ANGSLLLHGQ VGQQEQGGGV TITVDKLVAR PGEEFTVMRA NDLDAISAFQ SAITVQEQGK
QTGVIQISLE DKSPEHAALV ANALAESYVR QHVLNKQADA SKMLDFLKSE EPRLKSDLER
AEAALTAYQR QSGSINASDE AKVYLEGSVQ YEQQIAGLRL QMAQLTERYG DDHPMLVAAR
AQMAELQAQR TKYADRFRDL PATEVKAVQL QRDAKVAEDI YVLLLNRVQE LSVQKAGTGG
NVHIVDAALR PGVPVKPKKA LILSAAVILG LIAGTGFVFL RRNMFKGIDD PDHIERAFHL
PVFGLVPLSA EQGVLEAGFQ RGGERLRSVL ANARPKDVTV ESLRSLRTSM QFTLMDAKNR
IVMLTGPMAG VGKSFLTVNL AVLLANSGKR VLMIDGDMRR GVLERYLGGA PDNGLSELLS
GQISLEEAIR SSQVDGLSFI SCGRRPPNPS ELLMSPRLPQ YLEGLAKRYD VIMIDTPPVL
AVTDASIIGA YAGSTFFVMR SGMHSEGEIN DALKRLRAAG VHVQGGIFNG MPARSRGGYD
RGYAAVQEYL ST