Gene Bphyt_1897 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_1897 
Symbol 
ID6284408 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp2129581 
End bp2130648 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content65% 
IMG OID642621461 
Productextracellular solute-binding protein family 1 
Protein accessionYP_001895529 
Protein GI187923887 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0687] Spermidine/putrescine-binding periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.179851 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.425748 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAGAG CGTTGCATCG CCGCCTGTCC GCCTCGCCCC GCCCCACCCT CGCAGCACTT 
CTCGCCGCTT GCGCGCTCGC CGCGCCGCTC CTCGCGCAAG CCGACACCAC GCTCTATGTC
GCCAATGTCG GCGGCTCGAA CGAGCAGCTC TACCGGCAGA AAATCATCCC GCCGTTCGAG
AAGGCGCATA ACGTCAAGAT CGTCTACGTC GCGGGCAATT CGAGCGATAC GCTGGCCAAG
CTGCAGGCGC AGAAGGGCCA TCAGCAGATC AACGTCGCCG TCATGGACGA CGGTCCGATG
TACCAGGCGA TGCAGCTCAA CCTGTGCGCG AAGCTCGACG ACGCGCCCGT GATGAAAGAC
GTCTACCCGC TCGCGAAGAT CGGGCCGAGC GCGATCGGCG TCGGCATGGT GGCGACCGGC
ATCGGCTACA ACGAGGAGGC CTTCAAAAAG GCCGGCCTGC CACCGCCCGA CTCGTGGAAG
GCGCTCACCG ACAGCCGCAT CAAGGGCAAA CTCGGCGTGC CGCCGATCAC CAACACCTAT
GGTCTGCATA CGCTCGTGAT GCTCGCGCGT CTTTCCGGCG GCGGCGAGAA GAACATCGAT
CCCGGCTTCA CCGCGATGAC CAGACAGGTC GCGCCGAATG TGCTGTCCTG GGCACCGACG
CCCGGCGAGA TGGACGGCCA GATGCAGTCC GGCGACGTGA TCCTCGCGCC GTACGGCAGC
GGGCGCGCCG TCGCCTTGCA GAACACCGGC TTTCCGCTCA AGTTCATTTA CCCGAAAGAA
GGCGCGGTCG CGTTGCAGGT GGCGGCCTGC GCGATCGCCG AGAACGCGCA GCCGCAGTTG
TCGCAACAGT TCGTGCAATA CCTGTTGAGC CCGGAAGTAC AGGTGTTGCA GGCGCAAGGC
ATCGGTCTGG GTCCGGTCAA CAAGACCGTC AAGCTCACAC CTGAGATCGC CGCCCGCGTG
CCCTACGGTC CCGAGCAGAT CTCGAAGCTG ACCGCGATGG ACTGGGCCAC GATCAACCAG
CATCGCACCG AGTGGACCGA GCGCTGGAAC CGTTCGGTCG AACGCTGA
 
Protein sequence
MKRALHRRLS ASPRPTLAAL LAACALAAPL LAQADTTLYV ANVGGSNEQL YRQKIIPPFE 
KAHNVKIVYV AGNSSDTLAK LQAQKGHQQI NVAVMDDGPM YQAMQLNLCA KLDDAPVMKD
VYPLAKIGPS AIGVGMVATG IGYNEEAFKK AGLPPPDSWK ALTDSRIKGK LGVPPITNTY
GLHTLVMLAR LSGGGEKNID PGFTAMTRQV APNVLSWAPT PGEMDGQMQS GDVILAPYGS
GRAVALQNTG FPLKFIYPKE GAVALQVAAC AIAENAQPQL SQQFVQYLLS PEVQVLQAQG
IGLGPVNKTV KLTPEIAARV PYGPEQISKL TAMDWATINQ HRTEWTERWN RSVER