Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_1897 |
Symbol | |
ID | 6284408 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 2129581 |
End bp | 2130648 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642621461 |
Product | extracellular solute-binding protein family 1 |
Protein accession | YP_001895529 |
Protein GI | 187923887 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.179851 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.425748 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAGAG CGTTGCATCG CCGCCTGTCC GCCTCGCCCC GCCCCACCCT CGCAGCACTT CTCGCCGCTT GCGCGCTCGC CGCGCCGCTC CTCGCGCAAG CCGACACCAC GCTCTATGTC GCCAATGTCG GCGGCTCGAA CGAGCAGCTC TACCGGCAGA AAATCATCCC GCCGTTCGAG AAGGCGCATA ACGTCAAGAT CGTCTACGTC GCGGGCAATT CGAGCGATAC GCTGGCCAAG CTGCAGGCGC AGAAGGGCCA TCAGCAGATC AACGTCGCCG TCATGGACGA CGGTCCGATG TACCAGGCGA TGCAGCTCAA CCTGTGCGCG AAGCTCGACG ACGCGCCCGT GATGAAAGAC GTCTACCCGC TCGCGAAGAT CGGGCCGAGC GCGATCGGCG TCGGCATGGT GGCGACCGGC ATCGGCTACA ACGAGGAGGC CTTCAAAAAG GCCGGCCTGC CACCGCCCGA CTCGTGGAAG GCGCTCACCG ACAGCCGCAT CAAGGGCAAA CTCGGCGTGC CGCCGATCAC CAACACCTAT GGTCTGCATA CGCTCGTGAT GCTCGCGCGT CTTTCCGGCG GCGGCGAGAA GAACATCGAT CCCGGCTTCA CCGCGATGAC CAGACAGGTC GCGCCGAATG TGCTGTCCTG GGCACCGACG CCCGGCGAGA TGGACGGCCA GATGCAGTCC GGCGACGTGA TCCTCGCGCC GTACGGCAGC GGGCGCGCCG TCGCCTTGCA GAACACCGGC TTTCCGCTCA AGTTCATTTA CCCGAAAGAA GGCGCGGTCG CGTTGCAGGT GGCGGCCTGC GCGATCGCCG AGAACGCGCA GCCGCAGTTG TCGCAACAGT TCGTGCAATA CCTGTTGAGC CCGGAAGTAC AGGTGTTGCA GGCGCAAGGC ATCGGTCTGG GTCCGGTCAA CAAGACCGTC AAGCTCACAC CTGAGATCGC CGCCCGCGTG CCCTACGGTC CCGAGCAGAT CTCGAAGCTG ACCGCGATGG ACTGGGCCAC GATCAACCAG CATCGCACCG AGTGGACCGA GCGCTGGAAC CGTTCGGTCG AACGCTGA
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Protein sequence | MKRALHRRLS ASPRPTLAAL LAACALAAPL LAQADTTLYV ANVGGSNEQL YRQKIIPPFE KAHNVKIVYV AGNSSDTLAK LQAQKGHQQI NVAVMDDGPM YQAMQLNLCA KLDDAPVMKD VYPLAKIGPS AIGVGMVATG IGYNEEAFKK AGLPPPDSWK ALTDSRIKGK LGVPPITNTY GLHTLVMLAR LSGGGEKNID PGFTAMTRQV APNVLSWAPT PGEMDGQMQS GDVILAPYGS GRAVALQNTG FPLKFIYPKE GAVALQVAAC AIAENAQPQL SQQFVQYLLS PEVQVLQAQG IGLGPVNKTV KLTPEIAARV PYGPEQISKL TAMDWATINQ HRTEWTERWN RSVER
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