| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1876 |
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| Symbol | ispF |
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| ID | 6283398 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 2109091 |
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| End bp | 2109570 |
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| Gene Length | 480 bp |
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| Protein Length | 159 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642621439 |
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| Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| Protein accession | YP_001895508 |
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| Protein GI | 187923866 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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| TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00235841 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.234835 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTCA GAATTGGGCA AGGGTATGAC GTGCATGCGC TGGTGCCGGG GCGTCCGTTG
ATTATCGGCG GCGTGACGAT TCCGTATGAG CGCGGCCTGC TCGGCCATTC GGACGCGGAT
GTGCTGCTGC ACGCCATCAC CGACGCCATT TTCGGCGCCG CCGCGATGGG CGATATCGGC
CGCCATTTTT CCGACACCGA CGCGAAGTTC GCCGGCGCGG ACAGCCGCGT GTTGCTGCGT
GAATGTTTCG CGCGCGTGAA AGCGGCGGGT TTTTCCATCG CCAATGTGGA TAGCAGCGTG
GTCGCGCAGG CGCCGAAGCT CGCGCCGCAT ATCGAGGGCA TGCGCGCCAA TATCGCCGCC
GATCTCGGAC TGCCGGTCGA GCGCGTCAAC GTCAAAGCCA AGACCAATGA GAAGCTCGGT
TATCTCGGCC GAGGCGAGGG TATCGAAGCT CAGGCCGCGG TTCTGCTGAT CAAGAACTGA
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| Protein sequence | MDFRIGQGYD VHALVPGRPL IIGGVTIPYE RGLLGHSDAD VLLHAITDAI FGAAAMGDIG
RHFSDTDAKF AGADSRVLLR ECFARVKAAG FSIANVDSSV VAQAPKLAPH IEGMRANIAA
DLGLPVERVN VKAKTNEKLG YLGRGEGIEA QAAVLLIKN
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