| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1874 |
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| Symbol | |
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| ID | 6284115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 2104724 |
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| End bp | 2108206 |
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| Gene Length | 3483 bp |
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| Protein Length | 1160 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642621437 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001895506 |
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| Protein GI | 187923864 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.157118 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0187303 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGACA TCGCCGCATC ATCGCAGTAC TCTCCGCCCG TCGCGCTCGT CAAGGCCGGC
CAGCGTTTCG CCTTTGACGG CACGCACGGC TCGTCCGACG CGCTGCTGAT CGCCCGCTAC
CATCTCGCCT ATCGCGAGAA GGTGCCGCTG CTCGCGGTCG TGTGCGAAAG CGCCGTCGAT
GCGCAGCGTC TGGCGCAGGA AATCGGCTTT TTCGCGCCGG AAGCGCGCGT GCGTTTGCTG
CCGGACTGGG AAACGCTCCC TTACGATACC TTTTCACCGC ATCAGGATCT GGTCTCGGAA
CGTCTCGCCA CGCTGCACGA TCTCGGCGAA GGCCGCTGCG ACATCCTGCT GGTGCCCGCC
ACCACGGCGC TGTACCGCAT GCCGCCCGCC TCGTTCCTCG CGGCCTACAC GTTTTCCTTC
GCGCAAGGCG AGCGGCTCGA CGAGGCCAGA ATCAAGGCGC AGCTGACGCT GGCCGGCTAC
GAACACGTGA GCCAGGTGGT GCGTCCGGGC GAATACTGCG TGCGCGGCTC GCTGCTCGAC
CTTTATCCGA TGGGCTCGCC CTTGCCCTAC CGGATCGACC TGTTCGACGA TCAGGTCGAC
TCGATCCGCG CGTTCGACCC AGACACCCAG CGCAGCCTGT ACCCGGTGAA AGACGTGCGC
CTGCTGCCCG GCCGCGAATT TCCGTTCGAC GAAGCCGCCC GCACCGCTTT TCGCAGCCGC
TGGCGCGAGA CCTTCGAGGG CGACCCGAGC CGCGCGGCGA TCTATAAGGA CATCGGCAAC
GGCGTGCCGT CGGCGGGGAT CGAATACTAT CTGCCGCTTT TCTTCGAAGA CACGGCCACG
CTGTTCCACT ACCTGCCCGA AGGCGCGCAA CTGGCGTTCG TCGGCGATCT TGACGCGGCG
ATCCGGCGCT TTACCAACGA CACGAAGCAG CGCTACAACT TCCTCTCCCA TGACCGCGAC
CGGCCGATTC TGGAGCCGCA GCGTCTGTTC CTCTCGGACG AGGATTTCTT CACGCTCGCC
AAGCCCTTCG CGCGGCTCTC GCTGCCTGCG AACGCCGGCG GCGGCTGGTC GACGCCGTTG
CCGAATCTCG CGATCGACCG TCATGCGGAA GATCCCGTCG CGGGCTTGCG CGCGTATCTC
GACACCACGC CAAACCGCGT GCTGTTCGCC GCCGAATCCG CGGGCCGGCG CGAAACGCTG
TTGCAGTTGC TCGCCGACAA TCACCTGCGG CCGGTATCGA GCGACAGCTT CCAGGACTGG
CTCACGAGTG ACGAGCGCTT TTCATTGGGC GTCGCGCCGC TCGCCAACGG TTTTGCCGTG
CCGGTGGACG GTATTGCGAT CATCACCGAG ACCGAGCTGT ATGGTCCGCT CGCGCGTCGC
GCGGGGCGCC GCCGTCAGGA ACAGGCGAGC AATGTCGATT CGATGGTGCG CGATCTGTCC
GAGCTCAAGG TGGGCGATCC GGTCGTGCAT TCGCAGCATG GCATCGGCCG CTATATGGGG
CTCGTCACCA TGGATCTCGG TGAAGGCGAG ACCGAGTTCC TGCACCTCGA ATACGCGGGC
GACAGCAAGT TGTACGTGCC CGTCGCCCAG CTGCACGTAA TCTCGCGCTA TAGCGGCGCC
GATCCGGAAA GCGCGCCGCT GCACTCGCTC GGCTCCGGCC AGTGGGAAAA AGCCAAACGC
AAGGCCGCGC AGCAGATTCG CGATACCGCC GCCGAGTTGC TGAACCTGTA TGCTCGCCGC
GCACTGCGCC AGGGTCACGC GTTCGCGCTC GAACCGAAGG ATTACGTGAA GTTCGCGGAG
AGCTTCGGCT TCGAGGAAAC GCCGGACCAG GCCGCGGCGA TCGCCGCCGT GATCGGCGAC
ATGACGAGCG GCAAGCCGAT GGATCGCCTC GTGTGCGGCG ACGTCGGCTT CGGCAAAACG
GAAGTCGCGC TGCGTGCGGC GTTCATCGCG GTGATGGGCG GCAAGCAGGT CGCCCTGCTC
TCGCCCACCA CGCTGCTCGC CGAACAGCAC ACGCAAACCT TCAGCGACCG CTTCTCCGAC
TGGCCGGTGC GGATCGCCGA ACTGTCGCGC TTCAAATCCA CCAAAGAAGT GAGCGCGGCG
ATCCAGCAGA TCAACGAAGG CACGGTCGAT ATCGTGATCG GCACGCACAA GCTGCTCTCG
TCCGATGTGC AGTTCAAGCG GCTGGGACTC GTGATCATCG ACGAGGAGCA TCGGTTCGGC
GTGCGTCAGA AAGAGGCGCT GAAGGCCTTG CGCGCCGAAG TGGACGTGCT CACGCTGACC
GCCACGCCGA TCCCGCGTAC GCTCGGCATG GCGCTCGAAG GGCTGCGCGA TTTCTCCGTG
ATCGCTACCG CGCCGCAAAA GCGCCTCGCG ATCAAAACCT TCGTGCGACG CGAGGAAGAC
AGCGTGATTC GCGAAGCCAT GCTGCGCGAG TTGAAGCGTG GCGGCCAGGT CTACTTCCTG
CACAACGAAG TCGAGACGAT CGAGAATCGC CGGCAGATGC TCGAAGCGTT GGTGCCCGAA
GCGCGTATAG CGGTCGCGCA TGGACAGATG CACGAACGCG AACTCGAACG CGTGATGCGC
GACTTCGTTG CACAACGCGC CAACGTATTG TTGTGCACGA CGATTATTGA AACCGGCATC
GACGTGCCGA GCGCCAACAC GATCCTGATT CACCGCGCCG ACAAGTTCGG TCTCGCGCAA
TTGCATCAAT TGCGTGGCCG TGTGGGCCGC TCGCATCACC AGGCGTATTC ATATCTGCTG
GTGCACGATC CGCAAGGACT GACCAAACAG GCGCAACGCC GGCTCGAAGC GATCCAGCAA
ATGGAAGAAC TCGGTTCGGG CTTCTATCTG GCCATGCACG ACCTCGAGAT TCGCGGCACA
GGCGAAGTGC TCGGCGATAA ACAATCCGGC GAGATTCACG AGATCGGCTT CCAGCTCTAC
ACCGACATGC TGAACGACGC GGTGAAGGCG CTCAAGGAAG GCAAGGAGCC GGACCTCACC
GCGCCGCTCG CCGCGACCAC CGAGATCAAT CTGCACGCGT CGGCGATTCT CCCCGCCGAC
TACTGCGGCG ATGTGCAGGA GCGTCTGTCG CTCTACAAGC GGCTGGCTAA TTGCGAGCAC
AACGATTCGA TCGACGGCAT TCAGGAAGAA TTGATCGACC GCTTCGGCAA GTTGCCGCCG
CAAGCGCATG CGCTGGTGGA GACGCATCGT CTGCGGCTGG CGGCGAAGCC GCTGGGCATT
TCGAAGATCG ATGCCGGCGA AGCGGTGATC GGCTTGCAGT TCATCCCCAA CCCGCCGATC
GACGCGATGC GGATCATCGA GATGGTGCAG AAACACAAGC ACATCAAACT CGCGGGCCAG
GACAAGCTGC GTATCGAAAC GCGCAGCCCC GATCTCGCGG TGCGTGTCGC GACGGTCAAG
GAAACCTTGC GCGCGCTCGG CACGCCGAGT CGCGGCACGG CGACGAGCGC AGCCGCGCGC
TGA
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| Protein sequence | MPDIAASSQY SPPVALVKAG QRFAFDGTHG SSDALLIARY HLAYREKVPL LAVVCESAVD
AQRLAQEIGF FAPEARVRLL PDWETLPYDT FSPHQDLVSE RLATLHDLGE GRCDILLVPA
TTALYRMPPA SFLAAYTFSF AQGERLDEAR IKAQLTLAGY EHVSQVVRPG EYCVRGSLLD
LYPMGSPLPY RIDLFDDQVD SIRAFDPDTQ RSLYPVKDVR LLPGREFPFD EAARTAFRSR
WRETFEGDPS RAAIYKDIGN GVPSAGIEYY LPLFFEDTAT LFHYLPEGAQ LAFVGDLDAA
IRRFTNDTKQ RYNFLSHDRD RPILEPQRLF LSDEDFFTLA KPFARLSLPA NAGGGWSTPL
PNLAIDRHAE DPVAGLRAYL DTTPNRVLFA AESAGRRETL LQLLADNHLR PVSSDSFQDW
LTSDERFSLG VAPLANGFAV PVDGIAIITE TELYGPLARR AGRRRQEQAS NVDSMVRDLS
ELKVGDPVVH SQHGIGRYMG LVTMDLGEGE TEFLHLEYAG DSKLYVPVAQ LHVISRYSGA
DPESAPLHSL GSGQWEKAKR KAAQQIRDTA AELLNLYARR ALRQGHAFAL EPKDYVKFAE
SFGFEETPDQ AAAIAAVIGD MTSGKPMDRL VCGDVGFGKT EVALRAAFIA VMGGKQVALL
SPTTLLAEQH TQTFSDRFSD WPVRIAELSR FKSTKEVSAA IQQINEGTVD IVIGTHKLLS
SDVQFKRLGL VIIDEEHRFG VRQKEALKAL RAEVDVLTLT ATPIPRTLGM ALEGLRDFSV
IATAPQKRLA IKTFVRREED SVIREAMLRE LKRGGQVYFL HNEVETIENR RQMLEALVPE
ARIAVAHGQM HERELERVMR DFVAQRANVL LCTTIIETGI DVPSANTILI HRADKFGLAQ
LHQLRGRVGR SHHQAYSYLL VHDPQGLTKQ AQRRLEAIQQ MEELGSGFYL AMHDLEIRGT
GEVLGDKQSG EIHEIGFQLY TDMLNDAVKA LKEGKEPDLT APLAATTEIN LHASAILPAD
YCGDVQERLS LYKRLANCEH NDSIDGIQEE LIDRFGKLPP QAHALVETHR LRLAAKPLGI
SKIDAGEAVI GLQFIPNPPI DAMRIIEMVQ KHKHIKLAGQ DKLRIETRSP DLAVRVATVK
ETLRALGTPS RGTATSAAAR
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