Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_1871 |
Symbol | mscL |
ID | 6284112 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 2101730 |
End bp | 2102176 |
Gene Length | 447 bp |
Protein Length | 148 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642621434 |
Product | large-conductance mechanosensitive channel |
Protein accession | YP_001895503 |
Protein GI | 187923861 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1970] Large-conductance mechanosensitive channel |
TIGRFAM ID | [TIGR00220] large conductance mechanosensitive channel protein |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0110608 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.0250819 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCATGG TCAAGGAATT CAAGGAATTT GCCCTCAAGG GCAACGTGAT GGATCTTGCA GTCGGTGTGA TTATCGGCGG CGCGTTCTCC ACCATCGTCA ATTCAATTGT TAAAGACCTG ATCATGCCGG TTGTCGGGCT TGCCACCGGC GGCCTCGATT TCTCCAACAA GTTCGTTCGC CTCGGCCCCA TTCCGCCCAC TTTCAAGGGC AGCCCCGAGT CGTATAAAGA CTTGCAAACG GCGGGCGTTG CCGTATTCGG TTACGGCTCG TTCATTACCG TGCTGATCAA CTTCCTGATT CTCGCGTTCA TCATTTTCCT GATGGTCAAG TTCATCAACA ATCTGCGCAA ACCGGCTGAA GCCGCGCCGG CAGCACCGCC GCCGCCCCCG GAAGACGTGC TGCTGCTGCG TGAAATCCGC GATTCGTTGA AGAACTCACC GCGTTAA
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Protein sequence | MSMVKEFKEF ALKGNVMDLA VGVIIGGAFS TIVNSIVKDL IMPVVGLATG GLDFSNKFVR LGPIPPTFKG SPESYKDLQT AGVAVFGYGS FITVLINFLI LAFIIFLMVK FINNLRKPAE AAPAAPPPPP EDVLLLREIR DSLKNSPR
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