Gene Bphyt_1839 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_1839 
SymbolrumA 
ID6281478 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp2063931 
End bp2065349 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content64% 
IMG OID642621402 
Product23S rRNA 5-methyluridine methyltransferase 
Protein accessionYP_001895471 
Protein GI187923829 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0012393 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.235598 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCCCGAA CTGCTCCCCA TCGCCGCGCG CCGAAGCGCT CCAAGACGCC TCCGCCCGCG 
CCGGCACACG TCGTCACCGG CAACGAGCCG GTCATCGAAA TCGTTTCGCT CGATATGGAA
GCGCGCGGCG TCGGCCGCAC GGAAACCGAA GACGGCACGT CCGGCAAGGT TATCTTTGTC
GAAGGCGCGT TGCCCGGCGA GCGCGTCAGT TATTCGACGC ATCGTAGCAA GCCCAAATTC
GAGCAGGCCG AAGTGGTCCA GGTGTTCCGC GAAAGCGTGA TGCGCACCAA GCCGAAATGC
ACTTACTTCG ATATCTGCGG CGGCTGTTCG ATGCAGCATC TCGACATTCG CGCGCAGGTG
GCCGTCAAGC AGCGTGTGCT CGAAGACAAC CTGCAGCATC TGGCGAAGCT GCGCCCGGAA
ACGGTGTTCC GGCCGATTCA TGGGCCGTCC TGGGGTTATC GCTACCGCGC GCGTCTGGCT
GTGCGTTTCC TGCCGGAAAA AGGCGGCATG CGCATCGGCT TCCATGAGAA GAAGAGCAGC
TACATCGCCG ACATGAAGAC GTGCGAAGTG CTGCCGCCGC ACGTGTCGGC CATGCTCATG
CCGTTGCGTT TCATGGTGCG TAAGCTGTCG ATTTACGACC GCATGCCGCA GCTTGAACTG
GCGGTGGGCT CGTCGGTTAC GGCGCTGGTG GTGCGCAATC TCGAGCCCAT CACGGCTGCG
GACGAGCAGG TGCTGCGTGA TTTCGCCGAT CAGCACAAGG TGCAGTTCTG GTTGCAGCCG
GGCGGCCCGG ATACGGTCGC GCCGTTCTAT CCGCTCGACG CGCAGCTCGA CTACACGCTG
CCGGAATACG GCATCCGCAT GCCGTTCAAG CCGACCGATT TCACCCAGGT GAATCACGCC
ATCAACCGCG TGCTGGTGAG CCGTGCGTTG CGCTTGCTGG CGCCGGCGCG CACGGATCGC
GTGCTCGATC TGTTCTGCGG GATCGGTAAC TTTACGCTGC CGCTCGCGCG GATTTCGAAG
GAAGTCGTGG GCATCGAAGG CAGCGAGGTG TTGACCGCGC GCGCGCTGGC CAATGCCGAG
TTGAACGGCG TGGCGGGGCA TACGTCGTTC GCGTGCCGCA ACCTGTTTGA AATCACCGCC
GACGACATGC GCGCGCTCGG CCACTTCGAC AAGTTCCTGA TCGATCCGCC GCGCGAAGGT
GCGCTGGCTG TCGCCAAGGC GCTGGTGGAG ATCGCGCAGA GCGGCGATGG TCCGCTGCCT
AAGCGCATCG TGTATGTCTC GTGCGCGCCG GCGACCCTCG CGCGCGATGC CGGTCTGCTC
GTGCATGAGG CGGGCTATCG GCTGGTGGGG GCGGGCGTGG TCAATATGTT CCCGCATACG
TCGCATGTGG AGTCGATTGC GTTGTTCGAG CGGGATTGA
 
Protein sequence
MSRTAPHRRA PKRSKTPPPA PAHVVTGNEP VIEIVSLDME ARGVGRTETE DGTSGKVIFV 
EGALPGERVS YSTHRSKPKF EQAEVVQVFR ESVMRTKPKC TYFDICGGCS MQHLDIRAQV
AVKQRVLEDN LQHLAKLRPE TVFRPIHGPS WGYRYRARLA VRFLPEKGGM RIGFHEKKSS
YIADMKTCEV LPPHVSAMLM PLRFMVRKLS IYDRMPQLEL AVGSSVTALV VRNLEPITAA
DEQVLRDFAD QHKVQFWLQP GGPDTVAPFY PLDAQLDYTL PEYGIRMPFK PTDFTQVNHA
INRVLVSRAL RLLAPARTDR VLDLFCGIGN FTLPLARISK EVVGIEGSEV LTARALANAE
LNGVAGHTSF ACRNLFEITA DDMRALGHFD KFLIDPPREG ALAVAKALVE IAQSGDGPLP
KRIVYVSCAP ATLARDAGLL VHEAGYRLVG AGVVNMFPHT SHVESIALFE RD