Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_1839 |
Symbol | rumA |
ID | 6281478 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | + |
Start bp | 2063931 |
End bp | 2065349 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642621402 |
Product | 23S rRNA 5-methyluridine methyltransferase |
Protein accession | YP_001895471 |
Protein GI | 187923829 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0012393 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.235598 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCCCGAA CTGCTCCCCA TCGCCGCGCG CCGAAGCGCT CCAAGACGCC TCCGCCCGCG CCGGCACACG TCGTCACCGG CAACGAGCCG GTCATCGAAA TCGTTTCGCT CGATATGGAA GCGCGCGGCG TCGGCCGCAC GGAAACCGAA GACGGCACGT CCGGCAAGGT TATCTTTGTC GAAGGCGCGT TGCCCGGCGA GCGCGTCAGT TATTCGACGC ATCGTAGCAA GCCCAAATTC GAGCAGGCCG AAGTGGTCCA GGTGTTCCGC GAAAGCGTGA TGCGCACCAA GCCGAAATGC ACTTACTTCG ATATCTGCGG CGGCTGTTCG ATGCAGCATC TCGACATTCG CGCGCAGGTG GCCGTCAAGC AGCGTGTGCT CGAAGACAAC CTGCAGCATC TGGCGAAGCT GCGCCCGGAA ACGGTGTTCC GGCCGATTCA TGGGCCGTCC TGGGGTTATC GCTACCGCGC GCGTCTGGCT GTGCGTTTCC TGCCGGAAAA AGGCGGCATG CGCATCGGCT TCCATGAGAA GAAGAGCAGC TACATCGCCG ACATGAAGAC GTGCGAAGTG CTGCCGCCGC ACGTGTCGGC CATGCTCATG CCGTTGCGTT TCATGGTGCG TAAGCTGTCG ATTTACGACC GCATGCCGCA GCTTGAACTG GCGGTGGGCT CGTCGGTTAC GGCGCTGGTG GTGCGCAATC TCGAGCCCAT CACGGCTGCG GACGAGCAGG TGCTGCGTGA TTTCGCCGAT CAGCACAAGG TGCAGTTCTG GTTGCAGCCG GGCGGCCCGG ATACGGTCGC GCCGTTCTAT CCGCTCGACG CGCAGCTCGA CTACACGCTG CCGGAATACG GCATCCGCAT GCCGTTCAAG CCGACCGATT TCACCCAGGT GAATCACGCC ATCAACCGCG TGCTGGTGAG CCGTGCGTTG CGCTTGCTGG CGCCGGCGCG CACGGATCGC GTGCTCGATC TGTTCTGCGG GATCGGTAAC TTTACGCTGC CGCTCGCGCG GATTTCGAAG GAAGTCGTGG GCATCGAAGG CAGCGAGGTG TTGACCGCGC GCGCGCTGGC CAATGCCGAG TTGAACGGCG TGGCGGGGCA TACGTCGTTC GCGTGCCGCA ACCTGTTTGA AATCACCGCC GACGACATGC GCGCGCTCGG CCACTTCGAC AAGTTCCTGA TCGATCCGCC GCGCGAAGGT GCGCTGGCTG TCGCCAAGGC GCTGGTGGAG ATCGCGCAGA GCGGCGATGG TCCGCTGCCT AAGCGCATCG TGTATGTCTC GTGCGCGCCG GCGACCCTCG CGCGCGATGC CGGTCTGCTC GTGCATGAGG CGGGCTATCG GCTGGTGGGG GCGGGCGTGG TCAATATGTT CCCGCATACG TCGCATGTGG AGTCGATTGC GTTGTTCGAG CGGGATTGA
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Protein sequence | MSRTAPHRRA PKRSKTPPPA PAHVVTGNEP VIEIVSLDME ARGVGRTETE DGTSGKVIFV EGALPGERVS YSTHRSKPKF EQAEVVQVFR ESVMRTKPKC TYFDICGGCS MQHLDIRAQV AVKQRVLEDN LQHLAKLRPE TVFRPIHGPS WGYRYRARLA VRFLPEKGGM RIGFHEKKSS YIADMKTCEV LPPHVSAMLM PLRFMVRKLS IYDRMPQLEL AVGSSVTALV VRNLEPITAA DEQVLRDFAD QHKVQFWLQP GGPDTVAPFY PLDAQLDYTL PEYGIRMPFK PTDFTQVNHA INRVLVSRAL RLLAPARTDR VLDLFCGIGN FTLPLARISK EVVGIEGSEV LTARALANAE LNGVAGHTSF ACRNLFEITA DDMRALGHFD KFLIDPPREG ALAVAKALVE IAQSGDGPLP KRIVYVSCAP ATLARDAGLL VHEAGYRLVG AGVVNMFPHT SHVESIALFE RD
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