| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1838 |
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| Symbol | |
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| ID | 6281477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 2062932 |
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| End bp | 2063708 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642621401 |
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| Product | putative 3'-5' exonuclease |
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| Protein accession | YP_001895470 |
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| Protein GI | 187923828 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3298] Predicted 3'-5' exonuclease related to the exonuclease domain of PolB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00376243 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.478604 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACCGA TTCTTGTTTT CGACATCGAG ACGATTCCCG ATGTCGCCGG CATTCGCCGC
CTCGAAGATT TGCCCGCCGA CCTGAGCGAC GCCGAAGTCG CCGAGCATGC GTTCGCCGCG
CGCCGCGAAA AAACCGGCAG CGATTTCCTG CCGCATCATC TGCAACGGAT CGCGGCGATT
TCCTGCGTGT TCCGTGACAA CAACGGCTTC CGGGTGCGCT CGCTCGGCAC GCTGGCAGAC
GGCGAGGCGG CGCTGGTGCA GTCGTTCTAT CGCGTGATCG AGAAGTACAC GCCGCAGCTC
GTGTCGTGGA ACGGCGGCGG CTTCGACCTG CCGGTGCTGA ACTATCGCGC GCTCGTCAAC
GGCATTCCCG CCTATAAGTT TTGGGATCTC GGCGAGGACG ACCGCGAGTT CAAGTGGAAC
AACTACATCA GCCGCTATCA CGCGCGTCAC ACGGATCTGA TGGACGTGCT CGCCATGTAC
CAGGCGCGCG CCAACGCGCC ACTCGACGCG CTCGCCAAGA TGTGCGGCTT CCCCGGCAAG
ATGGGCATGG ACGGCAGCCA GGTGTGGCAT GCGTATCAGG AAGGGCGCAT CGAGGAAATT
CGCAACTACT GCGAGACCGA CGTCGTCAAT ACATACTTGC TCTATTGCCG CTTCCAACTG
ATTCGCGGCG CGTTTTCGCC TGCGGAGTAT GCTGACGAGA TCAACCTGGT CAAGAACGCG
CTGGCGCTGG AAACGGCGCC GCAATGGGCC GAGTATCTGG CGGCGTTCGA CCAGTAA
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| Protein sequence | MTPILVFDIE TIPDVAGIRR LEDLPADLSD AEVAEHAFAA RREKTGSDFL PHHLQRIAAI
SCVFRDNNGF RVRSLGTLAD GEAALVQSFY RVIEKYTPQL VSWNGGGFDL PVLNYRALVN
GIPAYKFWDL GEDDREFKWN NYISRYHARH TDLMDVLAMY QARANAPLDA LAKMCGFPGK
MGMDGSQVWH AYQEGRIEEI RNYCETDVVN TYLLYCRFQL IRGAFSPAEY ADEINLVKNA
LALETAPQWA EYLAAFDQ
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