| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1829 |
|---|
| Symbol | |
|---|
| ID | 6284037 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 2053427 |
|---|
| End bp | 2054668 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642621392 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001895461 |
|---|
| Protein GI | 187923819 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.198369 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCCA TCCCAGAATC AGGCGCGAGC GCCGCGCCGC AAGATAAAAC CGGCCCGCTC
GCCGGCGTCA AGGTGCTGGA ACTCGGCACG CTGATCGCCG GCCCGTTCGC CGCGCGTTTT
CTCGGCGAGT TCGGCGCCGA CGTCATCAAG ATCGAAGATC CCAAGGGCGG CGACCCGCTG
CGCAAATGGC GCAAGCTCTA TCCCGAAGTC GGCGGCACGT CGCTCTGGTG GGCCGTGCAG
GCGCGCAACA AGAAATCCGT CACGATCAAT CTGAAGGCCG AAGAGGGCAA GGAGATCGTG
CGGCGCCTCG CGAAAGAAGC GGATATCGTC GTCGAAAATT TCCGGCCGGG TTTGCTGGAA
AAACTCGGGC TCGGTTACGA CGTGCTGTCG GCGGAAAACC CCGGCCTCGT CATGGTGCGG
CTGTCCGGCT ACGGTCAGAC CGGTCCGTAT CGCGACCGGC CCGGTTTCGG CGCGATTGCC
GAATCGATGG GCGGCTTGCG TCATATCACC GGCTACCCGG ATTTGCCGCC GCCGCGCATC
GGCATTTCAA TCGGCGATTC GATCGCCGCG CTGCACGGCG TGATCGGCGC ACTGATGGCG
CTGCATCACA AGCAGGTGAA CGGCGGCAAA GGGCAGGTCG TCGACGTCGC GCTGTACGAG
GCCGTCTTCA ACATGATGGA AAGCGTGGTG CCCGAATACG GCGTGTATGG CATGGTGCGC
GAGCGCACCG GCGCGTCGCT GCCGGGCATC GTGCCGTCTA ATACTTATCC GTGCCGCGAC
GGCAGCATCG TGATCGGCGG CAATAGCGAT CCGATCTTCA AGCGCCTGAT GATCGCGATC
GAGCGCGAGG ATCTCGCGAA CGATCCGGCG CTCGCGCACA ACGACGGCCG TGTGCCGCGT
ACCCAGGAAA TCGACGGCGC GATCGCTGGC TGGCTCGCCA CGCGCACCAT CGACGAAGCG
CTCGCCGTGC TGAACGCCGC CGACGTGCCG GTGGGCCGTA TCTACAGTGT GGCGGACATG
TTCACCGATC CGCAGTTCAT GGCGCGCCAG ATGATCCAGC GTTTCAAGTG GCAGGACGGC
CGCGAAATCA CGCTGCCGTC GGTCACGCCA AAGCTCTCGG CCACGCCGGG CGAGACACGC
TGGCTCGGCC CGGAACTGGG TGAACATACC GATGAAGTCC TGCAATCGCT AGGTTATGAT
GCAGACCACA TTGCAAGGTT GCACGCGCAA CAGATCGTTT GA
|
|---|
| Protein sequence | MSAIPESGAS AAPQDKTGPL AGVKVLELGT LIAGPFAARF LGEFGADVIK IEDPKGGDPL
RKWRKLYPEV GGTSLWWAVQ ARNKKSVTIN LKAEEGKEIV RRLAKEADIV VENFRPGLLE
KLGLGYDVLS AENPGLVMVR LSGYGQTGPY RDRPGFGAIA ESMGGLRHIT GYPDLPPPRI
GISIGDSIAA LHGVIGALMA LHHKQVNGGK GQVVDVALYE AVFNMMESVV PEYGVYGMVR
ERTGASLPGI VPSNTYPCRD GSIVIGGNSD PIFKRLMIAI EREDLANDPA LAHNDGRVPR
TQEIDGAIAG WLATRTIDEA LAVLNAADVP VGRIYSVADM FTDPQFMARQ MIQRFKWQDG
REITLPSVTP KLSATPGETR WLGPELGEHT DEVLQSLGYD ADHIARLHAQ QIV
|
|---|
| |