| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1794 |
|---|
| Symbol | |
|---|
| ID | 6282708 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 2012858 |
|---|
| End bp | 2014114 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642621357 |
|---|
| Product | NLP/P60 protein |
|---|
| Protein accession | YP_001895426 |
|---|
| Protein GI | 187923784 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.435053 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.00883906 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGAC TCGCCTTTTC GCTGCTGATC GTTCTGCTGC TCGCCGCCTG TGCCGGTGCG
CCGCAGAAAA CGTCGTCGCG CTCGGGCAGT TCGGTCGTGG TGGCGAACGG CGCTTATCAC
GCTCCGCCGC CCGGCTTCCC GAATTTCGTC GATCACAGCA TTGGCCGCGA GGAAATCTCG
ATTCAGGCAA TGAGTCTCGT CGGCATTCCA TACCGTTGGG GCGGGAATAC GCCGGATAGC
GGCTTCGATT GCAGCGGATT GGTTCGCTAT GTGGTTTTGC GTGCGGCCTC CGTGAACCTG
CCGCGCACGA CGGCCGACAT GAGCGGGCGC GGCGAATCGA TCGAGCCGGA CGAGATCGCG
CCGGGCGATC TGATTTTCTT CAATACGACG GGGCGCGCGC ACTCGCACGT CGGCATTTAT
GTGGGCAAGC TGCGTTTCGT CAACGCGCCG TCGACCGGCG GCACGGTGCG GCTCGACTAT
TTGACCAATC CTTACTGGGC CAAGCGTTTC GACGGGATTC GCCGCGTGGC CGCCCCGGCC
GCGACGCCGG CGCCGTTCGA TACGCCGAGT TATCAGGCGG CGGCGCCGCA GCCTGAACGC
GCTGTTTCGC CGGGGGCGCG GACGGCGCCG GCGTATGCCG GTGTGACTGG TACTGCGGCG
GCGGGTGCGC CAGCGTATGC AGGCAAGGCG GAGACCGTGG CGCCGACGTC GGCAAAGACT
GCCACACAGC CGCCGCCAGT TTATGCCGCT GGCGCGCCGC AACTCCAATC GCAACCGCAA
TCGACGCAGA CGGCCCGCGT CGCGGCAACG CCGCGCGCGC CGTCGACAAT CGAGGCGCAA
TCGCCAACGA CCGCAGCCGC GCCGCAAGCC GATCCGTTCG AACCGCCACC GCCGGCACTG
AGCGCAGCGC AGATGCAGGC GCGTGCGGCA GGCGCGGTGT CGCCGACGCC GGTTCCGGCT
GCACAAGCCA GCGCGTTCGA CGCCAACGCC GGCGCCGCCC AACAACAGGC GGCCACTTCA
CGCACGGCGC CGCAGATGGC GACCTCCCGT GCGCCCGATC CAATCGACGC CGCCGCCGAC
GCGTTCGAGC CGCCGCCGCC CGCTTCCGTC GCGGCGCGCC AGGCTCGCCA AGCGCAGCAA
GCCGATGAAA ACGGCAGCGT GCAGATCATG CGGGCTTCGA CGGGCGCGCG CGGCATGCCC
GCGCCTACGC AAACCAACGA CGACCCGATC GCCCGCTTCG CCAACGGCAA TTTCTGA
|
|---|
| Protein sequence | MRRLAFSLLI VLLLAACAGA PQKTSSRSGS SVVVANGAYH APPPGFPNFV DHSIGREEIS
IQAMSLVGIP YRWGGNTPDS GFDCSGLVRY VVLRAASVNL PRTTADMSGR GESIEPDEIA
PGDLIFFNTT GRAHSHVGIY VGKLRFVNAP STGGTVRLDY LTNPYWAKRF DGIRRVAAPA
ATPAPFDTPS YQAAAPQPER AVSPGARTAP AYAGVTGTAA AGAPAYAGKA ETVAPTSAKT
ATQPPPVYAA GAPQLQSQPQ STQTARVAAT PRAPSTIEAQ SPTTAAAPQA DPFEPPPPAL
SAAQMQARAA GAVSPTPVPA AQASAFDANA GAAQQQAATS RTAPQMATSR APDPIDAAAD
AFEPPPPASV AARQARQAQQ ADENGSVQIM RASTGARGMP APTQTNDDPI ARFANGNF
|
|---|
| |