| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1782 |
|---|
| Symbol | |
|---|
| ID | 6284628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 2001768 |
|---|
| End bp | 2003543 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642621345 |
|---|
| Product | glyoxylate carboligase |
|---|
| Protein accession | YP_001895414 |
|---|
| Protein GI | 187923772 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3960] Glyoxylate carboligase |
|---|
| TIGRFAM ID | [TIGR01504] glyoxylate carboligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.538882 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.818313 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGA TGAGAGCCGT CGACGCAGCC GTGCTGGTGC TCGAAAAAGA AGGCATCGAC
ACCGCATTCG GCGTTCCGGG CGCAGCGATC AACCCGTTCT ACTCGGCCAT GCGCAAGGCA
GGCAACATCA GCCACGTGCT GGCGCGCCAC GTCGAAGGCG CGTCGCATAT GGCCGAAGGC
TATACGCGCG CTCAACCGGG CAACATCGGC GTGTGTATCG GGACGTCGGG CCCCGCCGGC
ACGGACATGA TCACCGGCTT GTACTCGGCT CAGGCCGACT CCATTCCTAT TCTCGCCATC
ACGGGCCAGG CGCCGCGCGC GCGTCTGTAC AAGGAAGACT TCCAGGCCGT CGATATCGAG
TCGATCGCCA AGCCCGTCAC CAAGTGGGCC GTCACCGTGC GTGAACCGGC ACTCGTGCCG
CGCGTGTTCC AGCAGGCTTT TCACCTGATG CGCTCGGGCC GTCCGGGTCC GGTGCTGGTC
GACCTGCCGA TCGACGTGCA GCTCGCCGAA ATCGAATTCG ACATCGACAC CTACGAACCG
CTGCCGGTCT ACAAGCCGAA AGCGACGCGC AAGCAGATCG AAGCCGCGCT CACGTTGCTG
AATAACTCGG ACAAGCCGCT GATCGTCTCG GGTGGCGGCG TGTTGAACGC AGCCGCTGAA
GACCTGCTCG TCACGTTCGC CGAAACCATC GGCGTGCCGG TGATCCCGAC ACTGATGTCG
TGGGGCGCGA TTCCCGACGA CCATCCGTTG ATGGCCGGCA TGGTCGGCCT GCAAACCTCG
CACCGCTACG GCAACGCGAC GATGCTCGCC TCCGACTTCG TACTCGGCAT CGGCAACCGT
TGGGCGAACC GTCATACGGG CAGCGTCGAG GTGTACACGA AGGGCCGCAA GTTCGTGCAC
GTCGACATCG AACCGACGCA GATCGGCCGC GTGTTCGGCC CGGATCTGGG CATCGTGTCG
GACGCGAAGG CCGCGCTCGA ACTGTTCGTC GAAGTGGCAA AGGAATGGAA AGCCGCGGGC
AAGCTGAAGG ACCGCAGCGC ATGGGTCGCC GATTGCCAGG AGCGCAAGCG GACGATGCAT
CGCAAGACGC ACTTCGACAA TGTGCCGATG AAGCCGCAGC GCGTCTACGA AGAGATGAAC
CAGGTGTTCG GCCGCGACAC GTGCTACGTG AGCACGATCG GTCTCTCGCA GATCGCCGGC
GCGCAGTTCC TGCACGTCTA CAAGGCGCGC AACTGGATCA ACTGCGGCCA GGCCGGCCCG
CTCGGCTGGA CGATTCCGGC AGCGCTCGGC GTGCGTGCGG CTGATCCGCA GCGTCCGATC
GTGGCGCTCT CGGGTGACTA CGACTTCCAG TTCATGATCG AAGAATTGGC AGCGGGCGCG
CAATTCAAGC TGCCGTACGT GCATGTGGTG GTGAACAACT CGTACCTCGG CCTGATCCGC
CAGGCACAGC GCGCGTTCGA CATGGACTTC TGCGTGCAGC TCGGTTTCGA GAACATCAAC
GCGCCGGAGA TGAACGGCTA CGGCGTGGAT CACGTTGCCG TCGCCGAAGG TCTGGGTTGC
AAGGCGATCC GCGTGTTCAA ACCGGAAGAA CTGAAGCCCG CGCTGCTGAA GGCGCAATCG
ATGCTCTCCG AGTTCAACGT GCCGGTGATC GTCGAAGTGA TTCTCGAACG TGTGACCAAC
ATTTCGATGG GCACCGAGAT CGACGCGATC AACGAGTTCG AAGAACTGGC TGCGAAGCGC
GAGGACGCAC CGACCGCGAT CAGCATGCTC GACTGA
|
|---|
| Protein sequence | MAKMRAVDAA VLVLEKEGID TAFGVPGAAI NPFYSAMRKA GNISHVLARH VEGASHMAEG
YTRAQPGNIG VCIGTSGPAG TDMITGLYSA QADSIPILAI TGQAPRARLY KEDFQAVDIE
SIAKPVTKWA VTVREPALVP RVFQQAFHLM RSGRPGPVLV DLPIDVQLAE IEFDIDTYEP
LPVYKPKATR KQIEAALTLL NNSDKPLIVS GGGVLNAAAE DLLVTFAETI GVPVIPTLMS
WGAIPDDHPL MAGMVGLQTS HRYGNATMLA SDFVLGIGNR WANRHTGSVE VYTKGRKFVH
VDIEPTQIGR VFGPDLGIVS DAKAALELFV EVAKEWKAAG KLKDRSAWVA DCQERKRTMH
RKTHFDNVPM KPQRVYEEMN QVFGRDTCYV STIGLSQIAG AQFLHVYKAR NWINCGQAGP
LGWTIPAALG VRAADPQRPI VALSGDYDFQ FMIEELAAGA QFKLPYVHVV VNNSYLGLIR
QAQRAFDMDF CVQLGFENIN APEMNGYGVD HVAVAEGLGC KAIRVFKPEE LKPALLKAQS
MLSEFNVPVI VEVILERVTN ISMGTEIDAI NEFEELAAKR EDAPTAISML D
|
|---|
| |