| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1707 |
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| Symbol | |
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| ID | 6284296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 1932953 |
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| End bp | 1935454 |
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| Gene Length | 2502 bp |
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| Protein Length | 833 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642621268 |
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| Product | ribonuclease R |
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| Protein accession | YP_001895339 |
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| Protein GI | 187923697 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.497255 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGAG AAAAAATCAT CGATAAGCCC TTGAGCAAAT TTCCGTATCC GATTCCAAGC
CGCGAGGAGA TCCTCGGCGT CCTGCGCACG AGTGAAGCCC CGCTTGCCGC GAACGACATC
GCCGAAGCCC TGTCGATCAA GCGCCAGGAG CGCGAAGGAT TTTTCAAGCG CCTCGGCGCG
ATGGAGCGCG ACGGCCAGAT CCGGCTCGAT CAGCGCAATC TCTATCAGCT GACTCATCCG
TCGAACTTCG TCGCGGGCCG CGTGCAAGGT CATCGCGACG GCTACGGCTT TCTGATTCGC
GACGATGGCC AGGACGATCT GTTCCTGCCC ACCGCCGAAA TGCAGAAGGT CATGCACAAC
GACCGCGTGC TCGCGCGCAT CGTCGGCTAT GACCGGCGCG GCCGTCCGGA AGGGCATATC
GTCGAGGTCA CGGACCGCGC CAACAAGCGC GTGATCGGCC GCCTGCTCAA CGAGAACGGC
GCGCTGATCG TGGCGCCCGA AGACAAGCGC ATCGGCCACG ACATTCTGAT CCAGCAGAAC
ACCAAGAAGG CCAAGGTCGG CCAGGTGGTG GTGGTCGAGC TGACCGATTT CCCGAGCCGT
CATTCGCAGC CGCTCGGCCG CGTGGTGGAA GTGCTCGGCG ATATCGACGA CCCCGGCATG
GAAATCGAAA TCGCGGTGCG CAAGTACGGC GTGCCGCACG AATTCAGCCA GGCCGCGCTC
GACGAAGCCT CGCGCCTGCC CGACGAAGTG CGCCCGGTCG ACGCGCGCCA TCGCATCGAT
CTGCGCGACG TGCCGCTCGT CACGATCGAC GGCGAAGACG CCCGCGACTT CGACGACGCC
GTGTACTGCG AGCCGGTCCA GGTCGGCCGC GGCGAGGGCT TCCGTCTCAT CGTCGCGATC
GCGGACGTCT CGCACTACGT GCACCCGAAG AGCGGGCTCG ACGCCGACGC GATCGAACGC
AGCACCTCGG TCTATTTCCC GCGCCGCGTG ATCCCCATGC TGCCGGAGAA ACTGTCGAAC
GGCTTGTGCT CGCTGAACCC GCACGTCGAC CGTTGCGTGC TGGTGTGCGA CATGATCATC
ACCGCGCGCG GCGAAGTGAA GGCGTATCAG TTCTATCCCG GCGTGATGCA CTCGGCCGCG
CGTCTGACCT ACACGGAAGT CGCCGCGGTG CTGAAGAACA CCAAGGGCCC GGAGGCCACG
CGCCGCGCCG CCTTGCTGCC GCAACTGCAG AATCTGTACG GCGTCTACAA GTCGCTGTTC
GCCGCGCGCC AGAAACGCGG CGCGATCGAC TTCGATACCA CCGAGACGTA TATCGTCTGC
AATGCGCAGG GCAAGATCGA ACAGATCATT CCGCGCACCC GCAACGACGC GCACAAGCTG
ATCGAGGAAT GCATGCTGGC CGCGAACGTC TGCGCGGCCG ACTTCCTCAA GCGCAACAAG
CATCCGGGGC TGTTCCGCGT GCACGCCGGA CCGACCGCGG AAAAGCTCGA GAATCTGCGC
ACGTTCCTGC GCGGCATGGG CTTGACGCTG GCCGGCGGCG ACAAACCGCA CGCGAGCGAC
TACGCGGCAT TGATGGCGCA GATCCGCGAA CGGCCCGACG CACAGATGCT GCAAACCATG
CTGCTGCGCT CCATGCAGCA GGCGGTCTAC AGCCCGGACA ACATCGGCCA CTTCGGTCTC
GCGTACGAGG CGTATGCGCA CTTCACGAGC CCGATCCGCC GTTATCCCGA TCTGCTCACG
CACCGCGCGA TCTACGCGAT TCTGCAGGGC CGCAAGTATC AGCCGGAGCC GCCGCAAGGC
GTCGAGCTGA ATACGGCGCT CTCGCCGCGC GCGCGCGCCA TGCAGCAGGC CGACGACGAA
AAACGCGGCC GCGTGCGGGG CAACAACGTG GCCATCTGGG AAGAGCTCGG TCTGCATTGC
TCGGCCAACG AACGCCGCGC CGACGAAGCC TCGCGCGACG TCGAAGCCTG GCTCAAGTGC
TACTTCATGC GCGACAAGCT CGGCGAAGAG TACGGCGGCA TGGTGAACGG CGTGACGTCG
TTCGGTATTT TCGTGCAGCT CGATTCGCTC TTTATCGAAG GCCTCGTGCA CGTCACCGAA
CTTGGCTCGG ACTACTTCCA GTATGACGAG ATCAAGAACG AGTTGCGCGG CGAGCGCACC
GGGATTCGTT ATCGCCTGTC GGATCGCGTG CGGGTGCAGG TGAGCCGCGT CGATCTGGAT
GCACGCAAGA TCGACTTCCG GCTCGTGCGC GACACGCCGA TCAAGCCCCC GCTGGTGCGT
GGGCCGTCGG CCGACAAATC GTCCGGTGAA AACGGCGGCG CACGCGTGCG TGCGTTGCCG
CCGGCGGAAG GTGGCGCGCC GGCGCCGGGC GCGCGCCGCA AGAAGGCTGC GCCCGCGCAA
ACCGCGGCGG TCAAGGAAGC ACGCGCGGCG CGCGGCGCGG CGAAGAAGCA CGGCGCCGCG
ACCAAATCGG CACCGAAGCC GCAGGCACGC AAGAAGCGCT GA
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| Protein sequence | MQREKIIDKP LSKFPYPIPS REEILGVLRT SEAPLAANDI AEALSIKRQE REGFFKRLGA
MERDGQIRLD QRNLYQLTHP SNFVAGRVQG HRDGYGFLIR DDGQDDLFLP TAEMQKVMHN
DRVLARIVGY DRRGRPEGHI VEVTDRANKR VIGRLLNENG ALIVAPEDKR IGHDILIQQN
TKKAKVGQVV VVELTDFPSR HSQPLGRVVE VLGDIDDPGM EIEIAVRKYG VPHEFSQAAL
DEASRLPDEV RPVDARHRID LRDVPLVTID GEDARDFDDA VYCEPVQVGR GEGFRLIVAI
ADVSHYVHPK SGLDADAIER STSVYFPRRV IPMLPEKLSN GLCSLNPHVD RCVLVCDMII
TARGEVKAYQ FYPGVMHSAA RLTYTEVAAV LKNTKGPEAT RRAALLPQLQ NLYGVYKSLF
AARQKRGAID FDTTETYIVC NAQGKIEQII PRTRNDAHKL IEECMLAANV CAADFLKRNK
HPGLFRVHAG PTAEKLENLR TFLRGMGLTL AGGDKPHASD YAALMAQIRE RPDAQMLQTM
LLRSMQQAVY SPDNIGHFGL AYEAYAHFTS PIRRYPDLLT HRAIYAILQG RKYQPEPPQG
VELNTALSPR ARAMQQADDE KRGRVRGNNV AIWEELGLHC SANERRADEA SRDVEAWLKC
YFMRDKLGEE YGGMVNGVTS FGIFVQLDSL FIEGLVHVTE LGSDYFQYDE IKNELRGERT
GIRYRLSDRV RVQVSRVDLD ARKIDFRLVR DTPIKPPLVR GPSADKSSGE NGGARVRALP
PAEGGAPAPG ARRKKAAPAQ TAAVKEARAA RGAAKKHGAA TKSAPKPQAR KKR
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