Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_1655 |
Symbol | |
ID | 6282749 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | + |
Start bp | 1871531 |
End bp | 1872940 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642621216 |
Product | type II secretion system protein E |
Protein accession | YP_001895289 |
Protein GI | 187923647 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.591506 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAAAG AGATCGAATT TGCCGACGAC GCGCCTTCGT TCGCGCATAG CCAGCAGTTC CAGGACATCA AGAACGCGGC GCACGAACAT CTGCTCACGC GCATCGAAGA ACTCGGCTCC GAGTTCGGCC GCTGGTCGCG TAACGCGATC AACCAGTTCG TCGATCTGGA GATGGACAGC TTCGTCAGGC TGCGCCGGAT ACCGATCAAC GAGAGCGAGG TGCGCCTGAT CGCCGAGGCG CTGACCAAGG AACTCGCGGG CTTCGGTCCG ATCGAGGATC TGCTCGCCGA TCCGGCCGTC GAAGACATTC TGATCAACGG CTACAACGAC GTGTACGTGT CGCGCCACGG CATTCTCACG CGCATCCAGG TGCGCTTTGC CGATAACGCG CATCTGCTGC GGATCGTGCG GCGCATTCTT GCGCCGATCG GCCGGCGCCT GGACGAATCG AATCCGATGG TGGATGCGCG TTTGCCGAAC GGCGGCCGCG TGAACGTGGT AATCGAACCG CTCTCGATCG ACGGCCCGAT CGTCTCGATC CGCAAGTTCC GCAAGGATCC GATGCGGCCC GACGATCTGC TCGGCAACGG CACTTATAGC CCGGAAATCG GCGCGCTGCT CGAGGCCGCG GTGGCGGCGC GCTGCAATGT GCTGGTGTCG GGCGGCACGA GTTCGGGCAA GACCTCGCTG CTCAACGCGC TGGCCTTTCA TATTCCCGAG CCGGAACGGG TCGTGACGAT CGAGGACACC GCGGAACTGT CGCTGAACCA TCCGCACGTG GTGCGGCTCG AAAGCCGCCC GGGCGGTTTC GACGGCTCGG GCATCGTGAC GATTCGCGAC CTGCTGCGCA ATACGTTGCG GATGCGGCCG GACCGCATCA TCGTCGGCGA AGTGCGCGGT GGCGAAGTGC TCGAAATGCT GCAGGCGATG AACACCGGCC ACGACGGCTC GATGGGCACC GTGCACGCCA GCTCGCCGCG CGAATGCCTG TACCGGCTCG AAATGCTGGC TGGTTTCGCG GGCTTCCAGG GCACCGAGTC GAGTCTGCGC CGCCAGATCG CCAACGCGAT CGACTTCATC GTACAGATCG GGCGGCTTTC CAACGGGCGT CGGCGGATTC TGTCGATCAC GGAAGTCACG GGGCTGTCGG ACAACATCAT CGCGACTCAG GAGCTGTATC GCTATGAGCC TATCCTGACG GCCGAAGGCG ACGAGCTCGA CAACTGGGTT TCGCTGGGCA TTCATCCGCA CTCGCCGAAG CTGGCGCGTT TCCGTCAGGC GCTGGGAGGC GGTGAAGCAG GCAATGCGTT CGGCAACGCG GGCTTCGGCG GATCGGGCGG CGGCGGTTTC GGTGGCGGCA GTGGTGGCTT CGGCGGTGGC GGCGGCTTCG GCGGAGGCTT CAATGTCTAG
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Protein sequence | MAKEIEFADD APSFAHSQQF QDIKNAAHEH LLTRIEELGS EFGRWSRNAI NQFVDLEMDS FVRLRRIPIN ESEVRLIAEA LTKELAGFGP IEDLLADPAV EDILINGYND VYVSRHGILT RIQVRFADNA HLLRIVRRIL APIGRRLDES NPMVDARLPN GGRVNVVIEP LSIDGPIVSI RKFRKDPMRP DDLLGNGTYS PEIGALLEAA VAARCNVLVS GGTSSGKTSL LNALAFHIPE PERVVTIEDT AELSLNHPHV VRLESRPGGF DGSGIVTIRD LLRNTLRMRP DRIIVGEVRG GEVLEMLQAM NTGHDGSMGT VHASSPRECL YRLEMLAGFA GFQGTESSLR RQIANAIDFI VQIGRLSNGR RRILSITEVT GLSDNIIATQ ELYRYEPILT AEGDELDNWV SLGIHPHSPK LARFRQALGG GEAGNAFGNA GFGGSGGGGF GGGSGGFGGG GGFGGGFNV
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