| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1646 |
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| Symbol | |
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| ID | 6281096 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 1860596 |
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| End bp | 1862305 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642621207 |
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| Product | Polypeptide-transport-associated domain protein ShlB-type |
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| Protein accession | YP_001895280 |
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| Protein GI | 187923638 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2831] Hemolysin activation/secretion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTCG GGTATAGCAG CATAGGTACC GTCGTCCTCG CAGCGCTTGC GGCGAGCACC
GTGGCCATGC AAGCGCATGC GCAGTCCCGC CCAGGCGGTT CGGCGGTCGG CGGCAATCCG
CTGGATTCGC TGCCGCAGAT CAAGGCGCCC GACAAAGGCC CGAACGTGAC CGTGCAGGTC
GCGCCGCAAG CCCCCCAACT CGAGGAATTG CTTGCTCGCC ACATCACGCC TTCGCGCGTG
CAGGTGGAGG GCGTGAAGTC CATTCCCTTC GACGATGTCG CACAACGCTT CACGCCGCTC
GTCGGCAAGG ACACGACGAT CGGCGATCTG ATCCAGGTCG CCAACGGCGT CACGAAGCTC
TATCAGGACC GCGGCTTCGC GCTCTCGTTT GCCTTCATTC CCGCGCAGAC ATTCGAAGAC
GGCGTGGTGC GCGTGACGGT GGTGGAAGGC TACGTGTCCG CCGTCAAGGT GACGGGCAAG
GCCGGCGCCG TAGAAGACAA GATCCGCGCG ATCGCCGATC ACATCACCGC CGACCGGCCG
CTGCGGCGCG CTACGTTCGA GCGCTACATC AACGTGCTCG GGCTGTTGCC GGGCGTGAAG
GTCGCGGCCA ACGTGCCGCC GCCGCAGAAC ACCGACGGCG CCACCACGCT CGAACTGAAC
GTGGAGCGCA AGCCGTTCGA CGCCAGTACC GGGATCGATT TCAATCACCC CGGCGTGCAG
GGGCTGCTGA CCGCCACCGA AAACGGGCTG ACTTCGTTCG GCGAACAATT GAGCGTCTCG
GCTCTGCTGC CGAAGGGGCG TGACAACGTC ACCTATCTCG CCGCGCACGG CGCGGTGCCG
ATCGGCAGCA ACGGACTGAT CGCGAAGATC GACGCGTCGC ACTATCGCGG CAATCCAACC
GACAATCCCG GCTTGCCCTC CAGCATCGAA CGCACGGTCA TCAACGACAA GATCGGCGGT
TCGCTGGCGT ATCCGATCCT GTTAAGCAAC ACGCAAAGCG TGATCGGCAC GGCGTCGGTC
TATGCGTCGC ACGACGAGGA TCGCTACAAC AATCACGACA CCGGCGCACA GATCGGCTTC
CGCTCGCAAG TGCGAGTCAT GCAGTTGCAG GCCGATTACA CCAGCGTGCA GACGGGCCAA
GTGCGCCGCG CGAGCGTCAA CGTGGCGAAG GCGTTCGACA TCCTGGGCGC GTCCAAATCC
GGCGACTCGA ACGTGCCGGG CGCGCCCGTC ACCAATCCGG CGTCGATCAA CTTCGTGCGC
ACCGGCGCCA CCTTCTCGCA AACCAACGAG TGGCCGTTGA AGATCGGCAC GGCGGTCTCG
CTGACAGGCC AATACAGCGG CGTGTCGCTG CCGACCTCCG AGCAGATCTC GTTCGGTGCA
CAGCGTTTCG CGCAGGGCTA TCAGCCGGGC GAAGCCTCGG GCGATTCGGG CTGGGGCGCG
ATACTGGAAG TCAACCGCGC GTTCACACCG GGCTTCACCT ATCTGCGCAC GCTCACACCT
TACGTTTCAT TCGATATGGC GCGCGTCTAT CTGCATGCGG GTACGCCCTC GCCTTCGAAG
CTTTCCTCGA TCGCGTTCGG CTTCCGCATC TCGGATGCGA AGTACTACAG CCTGGATCTC
TCCGTGGCCA AAGCCATCGG CGACGCGCCG GTGGAAAGCG CGTCGCGTAG TCCGCGCATC
AACGCGACGT TCTCGTATCA GCTGAATTGA
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| Protein sequence | MKLGYSSIGT VVLAALAAST VAMQAHAQSR PGGSAVGGNP LDSLPQIKAP DKGPNVTVQV
APQAPQLEEL LARHITPSRV QVEGVKSIPF DDVAQRFTPL VGKDTTIGDL IQVANGVTKL
YQDRGFALSF AFIPAQTFED GVVRVTVVEG YVSAVKVTGK AGAVEDKIRA IADHITADRP
LRRATFERYI NVLGLLPGVK VAANVPPPQN TDGATTLELN VERKPFDAST GIDFNHPGVQ
GLLTATENGL TSFGEQLSVS ALLPKGRDNV TYLAAHGAVP IGSNGLIAKI DASHYRGNPT
DNPGLPSSIE RTVINDKIGG SLAYPILLSN TQSVIGTASV YASHDEDRYN NHDTGAQIGF
RSQVRVMQLQ ADYTSVQTGQ VRRASVNVAK AFDILGASKS GDSNVPGAPV TNPASINFVR
TGATFSQTNE WPLKIGTAVS LTGQYSGVSL PTSEQISFGA QRFAQGYQPG EASGDSGWGA
ILEVNRAFTP GFTYLRTLTP YVSFDMARVY LHAGTPSPSK LSSIAFGFRI SDAKYYSLDL
SVAKAIGDAP VESASRSPRI NATFSYQLN
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