| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1635 |
|---|
| Symbol | |
|---|
| ID | 6284569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 1844505 |
|---|
| End bp | 1846067 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642621196 |
|---|
| Product | drug resistance transporter, EmrB/QacA subfamily |
|---|
| Protein accession | YP_001895269 |
|---|
| Protein GI | 187923627 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.296627 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.000294236 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCAGG CTCAGGCGCA AGTCCCTCAT CCGCCGCTCG AGGGCGCGCA ACTGGTGATC
GGCACCATCG CGGTGTCGCT CGCCGTGTTC ATGAACGTGC TCGACACGTC GATCGCCAAC
GTGTCGATTC CCTCGATTTC GGGCGACCTC GGCGTGTCGT CCGACCAGGG CACGTGGGTC
ATCACTTCGT TCGCGGTTGC GAACGCGATC TCCGTGCCGC TCACCGGCTG GCTGACCGAA
CGCATCGGCC AGGTGCGGCT CTTCATGGCG TCGATCATCC TGTTCGTGAT CTCGTCGTGG
ATGTGCGGCC TCGCGCCGAC CCTGCCCTTT CTGCTCGCTT CGCGCGTATT GCAAGGCGCA
GTGGCCGGTC CGATGATTCC GCTGTCGCAA ACGCTCCTGC TGGCGAGCTA TCCACGCGCC
AAGGCGCCCA TGGCGTTATC CATGTGGGCG ATGACCACGC TGATCGCGCC GGTGGCCGGC
CCGATTCTCG GCGGCTGGAT CTCGGACAAC ATCTCGTGGC CGTGGATTTT CTACGTCAAC
ATTCCGGTCG GCGCGATTGC CGCCGCGGCG ACGTGGATGA TCTTCCGCAA TCGCGATTCG
GTCATCAGAA AAGCGCCGAT CGACGGTGTC GGTCTCGGCC TGCTGATCGT CTGGGTCGGC
TCGCTGCAAG TCATGCTCGA CAAAGGCAAG GATCTCGACT GGTTTTCGTC GACGACCGTC
GTCGTACTGG CGCTGGTCGC GGTGATCGCG CTCGCGTTCT TCATCGTGTG GGAATTGACG
GCCGAGCACC CGGTGGTGGA CCTATCGCTA TTCAGCCGGC GCAATTTCAC GGGCGGCACC
GTCGCGCTGT CGATCGGTTA TGGACTCTAC TTCGGCAATC TGGTGTTGCT GCCGTTGTGG
CTGCAAACCG ATATCGGCTA CACCGCGACC GAAGCCGGTC TGGTGATGGC GCCGGTCGGC
CTGTTCGCCG TGCTGCTGTC GCCGATCACC GGCAAGGTTT TGCCACGCAC CGATCCGCGC
TATATCGCTA CGCTGTCGTT TCTCGTGTTC GCGCTATGTT TCTGGATGCG CTCGCGTTAT
ACGACCGGCG TCGATACGTT TTCGCTGCTG GTGCCTACCT TGATTCAAGG GATCGGCATG
GCGGGGTTTT TCATCCCGCT GGTGTCAATT ACTCTGTCGG GACTGCCGGG CAACCGGATT
CCGGCGGCGT CGGGCCTGTC GAATTTCGTG CGGATCATGT GCGGCGGCAT CGGCACATCG
ATTTTCCAGA CGGCGTGGGA CCACCGCACG ATCATGCATC ACGCGCAACT GGCCGAACAG
GCTAGCGCGT ACAACCCGGT GTTCGACCAG TCGATCCGGC AGATGGGCGC GGCGGGCTTC
AGTCAACCAC AGGCATACGG CCTGTTCAAC ACGATGGCGA CGCAGCAGGC CGCGCAACTC
GGAGTGAACG ACCTGTTCTT CGTGTCCGCC GGCATCTTTA TCGCGTTGAT CGCGTTGATC
TGGATCACGA AGCCAGAACG TGCCGGCGGC GACGCGGGTG CGGCGGCTGC AGCGGCGCAC
TGA
|
|---|
| Protein sequence | MAQAQAQVPH PPLEGAQLVI GTIAVSLAVF MNVLDTSIAN VSIPSISGDL GVSSDQGTWV
ITSFAVANAI SVPLTGWLTE RIGQVRLFMA SIILFVISSW MCGLAPTLPF LLASRVLQGA
VAGPMIPLSQ TLLLASYPRA KAPMALSMWA MTTLIAPVAG PILGGWISDN ISWPWIFYVN
IPVGAIAAAA TWMIFRNRDS VIRKAPIDGV GLGLLIVWVG SLQVMLDKGK DLDWFSSTTV
VVLALVAVIA LAFFIVWELT AEHPVVDLSL FSRRNFTGGT VALSIGYGLY FGNLVLLPLW
LQTDIGYTAT EAGLVMAPVG LFAVLLSPIT GKVLPRTDPR YIATLSFLVF ALCFWMRSRY
TTGVDTFSLL VPTLIQGIGM AGFFIPLVSI TLSGLPGNRI PAASGLSNFV RIMCGGIGTS
IFQTAWDHRT IMHHAQLAEQ ASAYNPVFDQ SIRQMGAAGF SQPQAYGLFN TMATQQAAQL
GVNDLFFVSA GIFIALIALI WITKPERAGG DAGAAAAAAH
|
|---|
| |