| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1629 |
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| Symbol | |
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| ID | 6283216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 1835368 |
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| End bp | 1837248 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 642621190 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001895263 |
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| Protein GI | 187923621 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.00621954 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGACACATA CCCACGACAC CGATTCGTCC GAATCCGAGC GCGCCGTGCC GTCGGCGCGC
GCTGATGAAA CGCGCACCAC GCAAGCGTCG GCAGGCGAGG GCGAGCGCCC GGCGCAGACC
ACGGAAGCAG ACGGCGAAGA CCGTCCGCGC CGCGGCCTGC GTCGCGGCCC GCGCAGCCTG
ATCGCGCGGC GCCGCGCCGG CGCGAAGACG AAGGGCGCCG AAGGCGCGCC CGCGCAAGGG
GCGCCGGTCG TCACCGAGGC GCCGCCGGAC GGCGAAGTCG TCGCGCAAGT GCGTATGCCG
CGCAAGGATG CGGGCGCCAA GGGTCAGGGG CCGCGCCGCA ATGCAGCCGG CGCGAAGCGC
GAGGGCGCAC CGCGTGACGG CGCGCCGCGC GAAGGTCAGC GAGAAGGTCA ACGCGAGCGT
CAGCCGCGCG AAGGTGGTCA GCGTCAAAAC AACCGCCGCG GCGGTGAAGC GCCGGCAGCC
GCGGCAGTCG CGGGCCAAGA CGATCTGTTC TCGTACGTCA CATCCCCCGC GTTCGACGCG
GACAACAGCG CCACCGGCGG CGTGCGCGCG CCGATGCTGC GCCGTGGCAA GCCGGCCGCG
CCCAAGCGCG TGCTCGCAGC CGACGACGAC GCGCCGAAGC TGCACAAGGT GCTGGCCGAA
GCCGGCATGG GTTCGCGCCG CGACATGGAA GAACTGATTG TCGCCGGCCG CGTGTCGGTG
AACGGCGAGC CGGCTCACAT CGGCCAGCGC ATCATGCCGA CCGACCAGGT CCGCATCAAC
GGCAAGCCGG TCAAGCGCAA GTTGGCCAAT AAGCCGCCGC GCGTGCTGCT GTACCACAAG
CCGACCGGCG AGATCGTCAG CCACGCGGAT CCGGAAGGCC GTGCGTCGGT GTTCGACAAT
CTGCCGCCGA TGAAAACCGC CAAGTGGCTC GCGGTCGGCC GTCTCGACTT CAACACAGAA
GGTCTGCTGA TGCTGACCAC GTCGGGCGAT CTGGCGAACC GTTTCATGCA CCCGCGTTAT
AGCGTCGAGC GTGAATATGC GGTGCGCGTG GTCGGCGAAC TGGCTGAAGG GATGCGTCAG
AAGCTGCTGA ACGGCGTCGA GCTGGAAGAC GGCCCGGCGA ACTTCCTGCG TATCCGCGAT
GGCGGCGGCG AAGGCACGAA TCACTGGTAT CACGTCGCGC TCGCCGAAGG GCGTAACCGC
GAAGTGCGTC GTATGTTCGA AGCAGCCGGC CTGATGGTCA GCCGCCTGAT CCGCACCCGT
CACGGCCCGA TCTCGCTGCC GAAGGGTCTC AAGCGCGGCC GCTGGGAAGA ACTCGAAGAC
AATCAGGTGC GCGCGCTGAT GGCGTCGGTC GGCCTGAAGG CGCCGACTGA AGAAAAAGGT
GGTCGCCGGG AAGCGCCGGA GCGCAAGCAG CCGGACCCGA TGCAGACGTC GATGGGTTTC
ATTGGCCGCG AACCTGTGCT GATGTCGCAC AGCCGCTTCG ATCAGCAGCA ACCGCGTGGT
CAGGGCCAAG GTCGGCGGGG TGCGGCGGGC GGTGGCTTCG GTGGCGGCGC GGGCGCCGGT
TTCGGTGGCG GTTACGGCAA TCGCGGCGCC GGGCGCGGCG CCGGCGGTTT CAGCGGCCCG
ATGGGCGGCG GCGCGGGCGG CCCGCGTGGC GGCCGTGAAG TCGATGGCAA TCGCGCACCG
TCGGGCAATG GCAACCGTGC GGCTGGCGGC GGCAAGCGCG CCGGCGGCAG CGGCGGCCCC
AATCCGGGTA GCGGCGGTGG CAACCGCGGG CCTGGTGGCA ATCGCGGCGG CGCCGGCAAC
CGTGCGGGCG GCGGCAATGC CAACGCCGGC GGCGCCAATC GTGGCGGCGG CGCACCTCGC
GGCCGTTCGC GCGGCCGCTG A
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| Protein sequence | MTHTHDTDSS ESERAVPSAR ADETRTTQAS AGEGERPAQT TEADGEDRPR RGLRRGPRSL
IARRRAGAKT KGAEGAPAQG APVVTEAPPD GEVVAQVRMP RKDAGAKGQG PRRNAAGAKR
EGAPRDGAPR EGQREGQRER QPREGGQRQN NRRGGEAPAA AAVAGQDDLF SYVTSPAFDA
DNSATGGVRA PMLRRGKPAA PKRVLAADDD APKLHKVLAE AGMGSRRDME ELIVAGRVSV
NGEPAHIGQR IMPTDQVRIN GKPVKRKLAN KPPRVLLYHK PTGEIVSHAD PEGRASVFDN
LPPMKTAKWL AVGRLDFNTE GLLMLTTSGD LANRFMHPRY SVEREYAVRV VGELAEGMRQ
KLLNGVELED GPANFLRIRD GGGEGTNHWY HVALAEGRNR EVRRMFEAAG LMVSRLIRTR
HGPISLPKGL KRGRWEELED NQVRALMASV GLKAPTEEKG GRREAPERKQ PDPMQTSMGF
IGREPVLMSH SRFDQQQPRG QGQGRRGAAG GGFGGGAGAG FGGGYGNRGA GRGAGGFSGP
MGGGAGGPRG GREVDGNRAP SGNGNRAAGG GKRAGGSGGP NPGSGGGNRG PGGNRGGAGN
RAGGGNANAG GANRGGGAPR GRSRGR
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