| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1618 |
|---|
| Symbol | |
|---|
| ID | 6281875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 1824976 |
|---|
| End bp | 1826316 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642621179 |
|---|
| Product | diguanylate phosphodiesterase |
|---|
| Protein accession | YP_001895252 |
|---|
| Protein GI | 187923610 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.991621 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.575282 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCAG TCAGCGAATT GACCCTGAGC GGCCTGCTCC CGCATCTGGT CCGGGACGAG
TCCGGCTGGA CCGCGACGTG GCGCGCGCTG ACTTTGCATA GCGTGTTCCA GCCGGTGCTG
TCGGTGACGC ACCAGCGCGT GGTCGGCTAT GAGGGCTTGC TGCGCGCCTT CGATCCAGTC
GGTTTGCCGG TCTCGCCCGA CGTGCTGTTT TCCGGCACCC GCTCGGCCGC CGACGCCCGC
GAGCTCGATC GCATCGCGCG CTGCCTGCAT GTGGCGAATT TCATGGAGCA AGGCATCAGC
ACCGGCTGGC TGTTTTTGAA CACGCGCCCG CAGGTGTTCG AAACCGGCTG GCCGCAACGC
GCGTTTATCG ATGAACTGTC GGCGCACTTC GGCCTGCCGC AGGAGCGCAT CGTGATCGAA
GTGCTAGAGC AGCCTGCCGA CGACGAATCC GCGGTCGCCA GCATGCTCGC CGCCTCGCAG
CCGCGCGACT TCCTGATCGC GATAGACGAC TTCGGCACCG GCTTCTCGAA CTTCGACCGC
GTGTGGCGCT TCCGCCCGGA CATCGTCAAA CTCGACCGTT CGCTGGTCGC GCGCGCAGGC
AGGCGCGAAG GCGACGACTC GATGATCGGC CATCTGGTCT CCATGCTGCA TCAGTCCGGC
ACGCTGGTGC TGGCCGAAGG CGTCGAAACC GATGAAGAGC TGATGATCCT GATGGAAGCC
GATGTGGATT TCGTGCAGGG TTTCTGGCTC GGTCAGCCGA AGAGTTCCGT GCAGGCAGCC
TGCGCCAAGG TGCCGGCGCT GATCGAATCG ATGTGGAGCA AGTTCGCCGA CTACGAACGC
GAGCATGCCG GCCACCAGCG GCTCGGTTTC GAAGGTTTCG CGGAAGCGGT GCTGAGCGCC
GCCGAGACCT ATAAGGCCAC CGGCGATCTG CGTCAGGCGG CGCAAAAGGT CTGGCATCTG
CGCGAAGCAC GCCGCGTGTT CATCACCGAC GGGCAAGGTG AGCAGACCCT GCCTTCAGTG
ACGGCCGCCT CGGTGCCGCC GCCTCCGCTA CGGCTCGCGC CGCTCTATAC CGATACGCGC
AGCAACTGGT CGCGGCGCGC CTATTTCAAG CACGCGCTCG CCGCACCGGG GCGCGTCGCG
ATGATGGGTC CGCATTATTC GCTCGCCGAC GGGCAGGACT GCTACACCGC GGCCCTGGCT
TTCGAGCGTG ACGGCACGCA TGTGTTGTGC GTCGACTTCG TGCCGAGCGC CACGACCGCG
GTTGCGCGTC CTTCGGCACG CGGTCCTTCG AGACCCGGTC CTTCGGGACC CGGTCCTTCG
GCACGCGGCA GCAAGCGTTA A
|
|---|
| Protein sequence | MPSVSELTLS GLLPHLVRDE SGWTATWRAL TLHSVFQPVL SVTHQRVVGY EGLLRAFDPV
GLPVSPDVLF SGTRSAADAR ELDRIARCLH VANFMEQGIS TGWLFLNTRP QVFETGWPQR
AFIDELSAHF GLPQERIVIE VLEQPADDES AVASMLAASQ PRDFLIAIDD FGTGFSNFDR
VWRFRPDIVK LDRSLVARAG RREGDDSMIG HLVSMLHQSG TLVLAEGVET DEELMILMEA
DVDFVQGFWL GQPKSSVQAA CAKVPALIES MWSKFADYER EHAGHQRLGF EGFAEAVLSA
AETYKATGDL RQAAQKVWHL REARRVFITD GQGEQTLPSV TAASVPPPPL RLAPLYTDTR
SNWSRRAYFK HALAAPGRVA MMGPHYSLAD GQDCYTAALA FERDGTHVLC VDFVPSATTA
VARPSARGPS RPGPSGPGPS ARGSKR
|
|---|
| |