| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1608 |
|---|
| Symbol | |
|---|
| ID | 6282675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 1807268 |
|---|
| End bp | 1809898 |
|---|
| Gene Length | 2631 bp |
|---|
| Protein Length | 876 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642621169 |
|---|
| Product | MscS Mechanosensitive ion channel |
|---|
| Protein accession | YP_001895242 |
|---|
| Protein GI | 187923600 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTCAT GCCCGTCGCG GCGTGAGTCC GAGGCTGCGC CATCCAACGG CGGGCAGCCG
GCGACCCACG CCGCCTTTCA TTTTTCTTCT GACCGTAGCG CATGCGGCGC TCGCCACGGC
GCGCGCCCGC CACTCGCCGC GCGGTTCGCC GCGTGGGCGG CCGCAGTTTT TGTCGCGCTG
ATCCTGTGCG TGGGCTTATT GCCCGCGAAC GCGTTTGCCG CCGGCGCCGC CACCAGCACG
CCCGTCATTC CGGCCTTGCA GAGCCTGATC AACAGCGCGA CGGTGTCGGC GACGCCCGCG
TCCTCCGCTT CAGGCGCTTC GGCGGCGGAG GCAGCGTCCG CGCCGTCGCC GGCGAGTCAG
GCGGAATTGG CGCACTCCCT CGACAGCGTG ATCTCCACGC TTGACAACGA CCGTCAGCGC
ACGGCACTCG TCGCCCAGCT CAAAAAATTG CGCGACGTCT CGAAAAACGT CGCGCCGCCG
GCGCCCGCGC AACCGAGCCC TGGCCTGCTC GGCGCGATCG CGTCGGGCAT CGCGTCGTTC
GAATCCGACG TGCATCAGGG CCGCACGCCG GTCCGCTATT GGGGCGGCCG CTTCAACGCG
GCCGGCAACG AGCTCTACAC GATCATTTCG GGGCAGGGGC ACGAGAGCTT CGGCCGGATT
CTGTTTTCGA TGGCGGCAAT GTTGGCCGGC TGGGGCGCGT GTGCCGGCGC GCTGATCTAT
GTGCAGCACC GCCTGTACCG GCGCTTCGGC ATCGTCATGG GACTGCAGCC GAATCCCACC
ACGCGCGAAC TGCTGATCTT CGCGCTGCGC CGCGTCGGAC CCTGGATCAT CGCCTTCGTG
GCCGCGTTGC TGTTCGTGCG CGCCATGCCG GACGCGCTCG GCCGTACGCT CGGCATGGTG
GTCGCGTATG CGATCGTCGC GGGCGCGGTG TTTTCGGCGA TCTGTCTGAT CATGTTTTCG
CTGTTCGGCT CGGGGCACCG GCGGATCGCG GTGCGCCTGC TGATCGATCA TGCGCGGCGC
GTGCTGTTCG TGGTCGGCGT GTGCGGCGCG CTCGGCGACG CCGCCGTCAA TTACGACGTC
GCGCATCAAC TCGGCTCGAA CCTCGCCGCG CTGATTTCGA CGGCGGCCAA CATGACGGCC
GCCGTGCTCA CCGGCTATTT CGCGCTCGCG TTTCGCCGGC CGGTCGCGCA TCTGATCCGC
AATCGCCCTT ACGAGCAGCG CACCAATCAC AAGGCCGCCA CCGACGCCTT CGACGTGCTC
GCCGCACTGT GGCACGTGCC CGTGCTGGTG CTGGCCACCG CCTCGGTGGT CGCCACGCTC
GGCGGTTCGG GTTCCAGCGA AAACGTGCTG CAGATTTCAG TGGTAACCGC GGCCTTGCTG
GTGCTGGCGT TTTTCCTGTC GGCCGTCGTG TTGCGTCTGA CGCGTCCGCG CAGCGCGCGC
ACGCGGCGCC GCTCGCCGTA TCTGACACGC TTGCTGCGCT TTTTCGGCAC GCTGCTGACG
CTCTTCATCT GGCTGTTCTT CTTCGAACTC GCGGCGCGTT TGTGGGGCGT TTCGCTCGCC
GCGGTGGTCG AGGAAAGCGT CGCCGCGCGC GGTATCGCGC ACGCGGTAAC GGCGATCGTC
GCCACTGTGT TCATTGCCTG GCTGCTGTGG ATTCTGGTCG ACACGGCGAT CACCGAAGCG
CTCAATCCAG CCGGGCCGCG CAACAAGGCG CGCGCGCCGA GCATGCGCGC CCGCACGATG
CTGCCGCTGG TGCGCAACGT GCTGCTGGTC TCGATCATGA CGATCGCCGG CATCGTCACT
GCGGCGAATC TCGGCATCAA TGTCACGCCG CTGCTGGCGG GCGCCGGCGT GATCGGCCTC
GCGATCGGCT TCGGCGCACA GTCGCTCGTG ACCGACCTGA TCACGGGGCT GTTCATCATC
ATCGAGGATA CGATTTCGGT GGGCGACTGG ATCGACGTGG ACGGCGGCCA TGCCGGCACG
GTCGAGCATC TGTCGATCCG CACCGTGCGG CTGCGCGACG GTCAGGGCGC GATTCACGCG
ATCCCGTTTT CGCAGATCAA GATCGTCAAG AATCTGTCAC GCGACTTCGC TTATGCGGTG
TTCGAAGTGC GCATGTCGTT CACCACCGAC GTCGATCAGA TCACACAGCT GATTCGCGAA
GTCGGCGCCG ATCTGATGGC CGACTTCCGT TACCGGCGCG AGATGCTTGG ACCGATCGAG
GTATGGGGGC TGGACCGTTT CGATCCGAAC TGGATGGTCG TGAAAGGGCA GATCAAGACG
CGGCCGTTGC AGCAATGGAG CGTGGCGCGC GCCTTCAATC TGCGGCTGAA GCGCAAGATG
GACGAGGCGG GCATCGAAAT TCCGGTGCCG CAGATGCGCG TGTATACGTC GTCGAAAGAT
AGCGAAGGGC AGCCTTTGCA GGACGACGAA GTGTCGGGAA TCGCTCTCCA TCCGCATGAG
CATGAGCATG CGCAGGTCGG AGCGGCATCG GCGGCGCGGG CGGTGCATGC GCCGCTCGCC
GTAGCACGCG ATGTATCGCA TGAACCGCGT CCGGCGCCGC CGCCGACCGG GCAAACCGCG
CCGATTCCGC CGCAGATTCC GACGGCGGGC GAGGCGGGTG GGAAGAGTTG A
|
|---|
| Protein sequence | MQSCPSRRES EAAPSNGGQP ATHAAFHFSS DRSACGARHG ARPPLAARFA AWAAAVFVAL
ILCVGLLPAN AFAAGAATST PVIPALQSLI NSATVSATPA SSASGASAAE AASAPSPASQ
AELAHSLDSV ISTLDNDRQR TALVAQLKKL RDVSKNVAPP APAQPSPGLL GAIASGIASF
ESDVHQGRTP VRYWGGRFNA AGNELYTIIS GQGHESFGRI LFSMAAMLAG WGACAGALIY
VQHRLYRRFG IVMGLQPNPT TRELLIFALR RVGPWIIAFV AALLFVRAMP DALGRTLGMV
VAYAIVAGAV FSAICLIMFS LFGSGHRRIA VRLLIDHARR VLFVVGVCGA LGDAAVNYDV
AHQLGSNLAA LISTAANMTA AVLTGYFALA FRRPVAHLIR NRPYEQRTNH KAATDAFDVL
AALWHVPVLV LATASVVATL GGSGSSENVL QISVVTAALL VLAFFLSAVV LRLTRPRSAR
TRRRSPYLTR LLRFFGTLLT LFIWLFFFEL AARLWGVSLA AVVEESVAAR GIAHAVTAIV
ATVFIAWLLW ILVDTAITEA LNPAGPRNKA RAPSMRARTM LPLVRNVLLV SIMTIAGIVT
AANLGINVTP LLAGAGVIGL AIGFGAQSLV TDLITGLFII IEDTISVGDW IDVDGGHAGT
VEHLSIRTVR LRDGQGAIHA IPFSQIKIVK NLSRDFAYAV FEVRMSFTTD VDQITQLIRE
VGADLMADFR YRREMLGPIE VWGLDRFDPN WMVVKGQIKT RPLQQWSVAR AFNLRLKRKM
DEAGIEIPVP QMRVYTSSKD SEGQPLQDDE VSGIALHPHE HEHAQVGAAS AARAVHAPLA
VARDVSHEPR PAPPPTGQTA PIPPQIPTAG EAGGKS
|
|---|
| |