| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1594 |
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| Symbol | benD |
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| ID | 6284357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 1792529 |
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| End bp | 1793305 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642621155 |
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| Product | 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase |
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| Protein accession | YP_001895228 |
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| Protein GI | 187923586 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.423173 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCACGC AACGATTCGC TGGCAAGGTC ATGGTGGTTA CCGGCGCCGC GCAGGGCATC
GGTCGTGCGG TAGCGCTTCG CGCAGCCGCC GAAGGCGGCA AGGTGCTGTT CGTGGACCGC
GCCGACTTCG TGTCGGAAGT CGCCGCCGAA GCGCGCGGCG CCGAGACAGC GGGGTTTGTC
GCCGACCTTG AAACTTACGA AGGCGCCGCG TCGGCGATGG CCTTCGCCGC GCGCACTTTT
GGCGGCATCG ACATTCTGGT CAATGGCGTG GGTGGCGCGA TTCGCATGCG TCCCTTCGCC
GAGTTCGAGC CTGCGCAGAT CGATGCCGAA ATCCGGCGCT CGCTCATGCC GACGCTGTAC
GCGTGCCATG CAGTCCTGCC GTATCTGCTA CAGCGCGGAC GCGGGACGAT CGTCAACGTG
TCCTCGAATG CCACGCGCGG GATCCGCCGC GTTCCGTATT CGGCGGCGAA GGGCGGCGTG
AACGCGATGA CGCAGTCGCT GGCGATGGAA TACGCGGAGC ACGACATCCG CGTGGTCGCC
ACCGCGCCGG GCGGCACCGA TGCGCCTGCG CGACGTGTCC CGCGCAACGC GGCCGGCGAT
AGCGAGCAGG AAAAAATCTG GATGGGTGAA GCGGTGAAGC AGGTCACCGA ATCGACCTTC
CTGAAGCGCT ACGGCAGCAT CGACGAGCAG GCTGCGCCGA TTCTGTTCCT CGCTTCGGAC
GAGGCGGGTT ACATCACTGG AACGGTGTTG CCAGTGGCAG GCGGCGACAC GGGCTGA
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| Protein sequence | MSTQRFAGKV MVVTGAAQGI GRAVALRAAA EGGKVLFVDR ADFVSEVAAE ARGAETAGFV
ADLETYEGAA SAMAFAARTF GGIDILVNGV GGAIRMRPFA EFEPAQIDAE IRRSLMPTLY
ACHAVLPYLL QRGRGTIVNV SSNATRGIRR VPYSAAKGGV NAMTQSLAME YAEHDIRVVA
TAPGGTDAPA RRVPRNAAGD SEQEKIWMGE AVKQVTESTF LKRYGSIDEQ AAPILFLASD
EAGYITGTVL PVAGGDTG
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