| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1570 |
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| Symbol | |
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| ID | 6281215 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 1764633 |
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| End bp | 1766447 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642621134 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001895207 |
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| Protein GI | 187923565 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGCGA ACAGGATCAC CGCGCCCCGC CGGGGCTCCT TGCGCACGGT CATGGACCGG
CTTCGTGCGT TCGGCCGGCG CGTGGACGGC AAACCGCAGG CGGCCGCAAG CCGCGCTGCG
CAACTGGAAC AGGTGGTCGG CGCCGTCGAC CTGCTGGCGC ACGTCGACGA CGAACTGCGC
TTCATCTATG TGTCCGAAGC CAGCCTGCGC TTCATCGGCT ATCACCGCGA GTATCTCGAG
ACCATCACGC TGCACGACCT CGTGGCGCCG GCCGACGTGC CGCGCCTCGA CACGCTGCTG
ACGCGCGCCG CCGTCTCGGG CAACGTCGAG AAGGCCACGC TGAGCCTCAT CAAGTCGCTG
ACTTATCCGA TCACGGTCGA GCTGCGCGTG GTGCGCAGCA GCCACGACGG CACCGCGGGC
TATGCGATCG CCGGCTTCGA CGTGTCGGCC TGGCGCGCCA CCGAGGAACG TTTGACCCAG
GCGCTGCATC TGGACCGCCT GACCAATCTG GCCAACCAGT CGGCGCTGAT TCCCGCGCTC
CTCGACGCCC AGCAGCAGGC CGACGCGCAC GGCACACCGG CCGCGCTGCT GCTGCTCGAC
CTCGACGACT ATCAGCGCGT GAACCGCGCG CTCGGCTACG ATGCCGGCGA CGACATGCTG
CGCGACACCT CGCGCCGCAT CCTGAACATG ACGAGCCCGA GCGAGACCGT AGCGCGCGTG
GCCAGCGATG AGTTCGCGAT CCTCGTGAAG CCCGCCGCCA GCCGCACCGA CGCGGCGGCC
GCCGCCGAAA CGCTGGCGCG GCGCCTCCTG ACCGCGATCC AGCAGCCGTA TGTGTTCAAC
GGCCAGCAGG TGCATCTGTC GGCGAGCATC GGCATCGCGC TCTATCCCGA CGTGCGCCAC
GCCAACGACA CGGCCGGCCA CGACACCCAT CTGCTGCGCT GGGCCGATCA CGCCCTCCTG
CAGGCCAAAG CCGCCGGCGG CAACACGCTC GCCTTCTACG TCCCCGACGA CAACCCCGCC
GACGCCGAGC GCCTGAAGCT GGAGGCCGAT CTCTACGACG GAGTGCGCAA CGGCGAGTTC
TCGCTACACT TCCAGCCGAT CACGAGCAGC CGCACGCACG GCGTGGTCGG CGTGGAAGCG
CTGATCCGCT GGTTGCATCC GGTGCACGGA CTGGTGCCGC CGTCCATGTT CATCCCGCTT
GCCGAGTCGA TCGGCCTGAT CAACTTCCTC GGCAACTGGG TGTTGAAGGT GGCCTGCATG
CAGTTGATCC AGTGGGATGC GAAAGGCATC TCCCTGCAAT ACGTGGCCGT GAACGTGTCG
CCGCAGCAGT TCCGCGACCC GCGCTTCAAG GACTCCGTGC GCGAGGCGAT CGAATTGACC
GGCATCGATC CGCGCCGGCT CGTGTTCGAG ATCACCGAAA GCCTGCTGAT GCACGACCCG
GCGCACGCCA AGGGTCTGCT CGAAGACCTG ACCGCCATGG GCATCCGCTT CGCGGTCGAC
GACTTCGGCA CCGGTTATTC GAGCCTGGCT TACCTGCAAC GCTTCCCGCT GGCCAAGCTC
AAGATCGACA GGAGTTTTGT CGAGAATCTG CTAACCTCCC GGAACGATCA GGCAATCGTT
AGCGCCGTCG TGGGCCTCGC TCAGACACTG GATCTCGAAC TGGTGGCCGA GGGCGTCGAA
ACGGAAGCGC AGCGCGCCCT GCTCACCGAG ATGGGATGCG ATCATATCCA GGGGTGGCTC
GTCTGCAAGG CGCTGCCCTC CGACGAACTC GCGCAGCGTT TCGAAGCGCG CACGCTTCAT
TTGCACAGCG CCTAG
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| Protein sequence | MEANRITAPR RGSLRTVMDR LRAFGRRVDG KPQAAASRAA QLEQVVGAVD LLAHVDDELR
FIYVSEASLR FIGYHREYLE TITLHDLVAP ADVPRLDTLL TRAAVSGNVE KATLSLIKSL
TYPITVELRV VRSSHDGTAG YAIAGFDVSA WRATEERLTQ ALHLDRLTNL ANQSALIPAL
LDAQQQADAH GTPAALLLLD LDDYQRVNRA LGYDAGDDML RDTSRRILNM TSPSETVARV
ASDEFAILVK PAASRTDAAA AAETLARRLL TAIQQPYVFN GQQVHLSASI GIALYPDVRH
ANDTAGHDTH LLRWADHALL QAKAAGGNTL AFYVPDDNPA DAERLKLEAD LYDGVRNGEF
SLHFQPITSS RTHGVVGVEA LIRWLHPVHG LVPPSMFIPL AESIGLINFL GNWVLKVACM
QLIQWDAKGI SLQYVAVNVS PQQFRDPRFK DSVREAIELT GIDPRRLVFE ITESLLMHDP
AHAKGLLEDL TAMGIRFAVD DFGTGYSSLA YLQRFPLAKL KIDRSFVENL LTSRNDQAIV
SAVVGLAQTL DLELVAEGVE TEAQRALLTE MGCDHIQGWL VCKALPSDEL AQRFEARTLH
LHSA
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