| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1438 |
|---|
| Symbol | |
|---|
| ID | 6282510 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 1608635 |
|---|
| End bp | 1614586 |
|---|
| Gene Length | 5952 bp |
|---|
| Protein Length | 1983 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642621004 |
|---|
| Product | excinuclease ABC, A subunit |
|---|
| Protein accession | YP_001895077 |
|---|
| Protein GI | 187923435 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.836359 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCCACT CATTCAGACG GTCGGAAAAA TTGGCATCCA ACGGCAAAAA CGGCAAAAAC
GGCTCGAGCA GTATTAACGG CACAATCAAA ATTCGCGGCG CACGCCAGCA CAACCTCAAG
AACGTCGATC TCGACGTACG AACCGGCGAA ATGACGGTGG TCACCGGCCC GTCCGGTTCC
GGCAAGTCGA GCCTGGTGTT CGACACGCTG TATGCGGAAG GGCAGCGGCG CTACGTCGAA
ACATTCAGCG CTTACGCGCG GCAGTTTCTC GACCGCATGG ACCGGCCGCA AGTCGACCGC
GTCGACGGCG TGCCGCCGGC CATCGCGATC GACCAGACCA ATCCGGTGCG CAGTTCGCGC
TCCACCGTCG GCACCATGAC GGAGCTCAAC GATCACCTGA AGCTGCTCTA CGCGCGTGCC
GCCGAACTAT TCGACCGCAA GACGGCTCAT CAGGTGCGTC ACGACACGCC GGAAACGATC
TACGCCGAGT TGCTCGAACG CACCGCGCAG AACGAACCGC GGCTCGTCGT CACGTTCCCG
GTCGAGTTGC CGGAATCCGC GTCGGAGCAG GAAGTGGAGC AATGGCTGTC GGCCAGCGGC
TACACGCGCG TGCAGGCGCA GCGCGAAGTC GATTCACCCA CCGGCAAGCG CAAGCTGCTC
GACGTGGTGG CCGACCGCTT CCGGCTGCGC TCGGTGGACA AGCAACGGGT GGTCGAGGCA
ATCGAGGCTT CGCTCAAGCG CGGCGGCGGC CGCGTCAATA TTTATGTGCT GCCGGCGTCG
CCGGAAGGGC CGGAAAGCCA GGAAGCCGAG CCGCAAATCT GGCGTTTCTC CACCGGCTTG
CACAGCCCGG AGAGCGACCT GCGCTACGCC GACCCGCAGC CCGCGCTGTT CTCGTTCAAC
TCAGCCTACG GCGCGTGCGA AGTCTGCCGC GGCTTCGGCC GCGTGATCGG CGTCGACCTC
GGGCTGGTAA TTCCGGACGC GCGCAAGACG CTGCGCGACG GCGCGATCAA GCCCATGCAA
ACGCCCGCAT GGAAGGAGTG CCAGGACGAT TTGATGCGCT ACGCGGCGAA AGCCGATATC
CGTCGCGGCA CGCCTTGGGG CGAGTTGACG GACGCCGAGC GCGACTGGGT CATCAACGGC
TCGCCAGATT GGAACGGCAA GTGGCAAAGC CACTGGTACG GCGTCAAACG CTTCTTCGAG
TATCTCGAAT CGAAAGCGTA CAAGATGCAT ATTCGCGTGC TGCTGTCCAA GTATCGCAGC
TATACGCCGT GCGAAACCTG CGGCGGCGCG CGCCTGAAAA CGGAATCGCT GTTGTGGCGC
CTGGGTAGCA AGGCGAATGC GGACGACGTG TTGCCGGCCG CAAAGCGCTT CCTGCCGCGC
GGCGTCGACT GGACGCGCGG GCAACTCGAA GCGTTGCCGG GTTTGACCGT ACACGATCTG
ATGCTGATGC CGATCGAGCG CATCCGGCAC TTCTTCGACG AGATCAGCTT GCCGAGTGCC
TTGCTCGACG ACGCGCTCAA ACTGCTGCTC GCCGAAGTGC GCACGCGCCT CAAGTATCTA
TGCGACGTCG GCCTCGGCTA TCTGACGCTC GACCGGCAGA GCCGCACCTT GTCGGGCGGC
GAGGTGCAAC GGATCAACCT GACCACGGCG CTCGGCACCT CGCTCACCAA GACGCTGTTC
GTGCTCGACG AGCCGAGTAT CGGCTTGCAT CCGCGCGATC TGAACCGCAT CGTCGAAGCC
ATGCACCGTT TGCGCGATGC GGGCAACACG CTGGTGGTGG TCGAACACGA TCCCTCTGTG
ATGCTCGCGG CGGATCGTCT GATCGATATG GGTCCGGGGC CGGGCGAGCG CGGCGGCTCG
ATCATTTACG ACGGCGCGCC CGAGGCGATC CGTTCGTCAG GCACGCTCAC TGGCGAGTAC
CTCGGCGGCC GGCGGCATGT GGCCGACGCG GCGCATTGGT CGCAGCGTCC GGTGGATGCC
ACCACGCCGC GCATCGTGCT CGAAGGCGCG ACGGAACACA ATCTGCTCGA TGTCACGGTG
GAGATTCCGT TGGAGCGGCT CGTCTGCGTG ACGGGCGTGT CGGGTTCCGG TAAGTCCACG
CTCCTGCAAG ACGTGCTGTA TCCGGCCATG GCGCGGCACT TCGGACTCGC CACGGAATCG
CCGGGCGCAT TCAGAAGCCT GAGCGGCGCC GATCAGGTCA CCGACGTCGT GTTCGTTGAC
CAGTCGCCGA TCGGCAAGAC GGCGCGCTCG AATCCGGCGA GTTACGTCGG TGCGTTCGAC
GAGATCCGCA AACTGTTCGC CAAGGCGCCG CTCGCGCAGC AGCGCGGTTA CGGCCCCGGC
ATGTTCAGTT TCAATTCGGG CGAAGGTCGC TGCCCGACTT GTGGCGGCTC GGGTTTCGAA
CATATCGAAA TGCAGTTTCT GAGCGACGTA TACCTGCGCT GCCCCGATTG CGACGGGCGC
CGCTATCGCG CGGAACTGCT CGAAGTCAAG ATCGAGCGCG GCGAACCGGC GCGCGCGCTG
AGCATTGCCG ACGTGCTGGA ATTGACGGTG AGCGAAGCCA CCACGTACTT CGCTAAAGAC
GCCGAAGTGT TGCGCGTACT GCAGCCGATC GTCGACGTGG GCCTCGAATA CGTGAAGCTC
GGCCAGCCGG TGCCTACGTT GTCGGGCGGT GAAGCGCAGC GGCTCAAGCT CGCCGGTTTC
CTCGCGGAAT CCGCGCAGGC GCGGACCGCG CGCAGTGCGA AGCAAGCGGT CGCGAAGCGT
CTGTTCATGT TCGACGAGCC GACCACGGGT CTCCATTTCG ACGACATCGC CAAGCTGATG
CAGGCGTTCG GCAAGCTGCT CGCAAGCGGC CATTCGCTGA TCGTGATCGA ACACAATCTC
GACGTGATCC GCGCGGCCGA CTGGCTGATC GACCTCGGTC CCGAAGGCGG TGACGGCGGC
GGCCGTGTGC TGTGCGCGGG CACGCCGGAA GACGTCAAAA CGTGTTCGGA GTCGCATACT
GGCGAAGCGC TGCTGCAATA CGACCGCGCC ATGGGCGCGG CGGCCGAACC GGCGTCGCAA
GGCATTCCGT TGCAAAAAGC GCTGAGCGCG GCGCGCGCGC GCAGGGCGAT CGAAGGCGAG
GACGTGGTGC GTATCGTCAA TGCGCGCGAG CACAACCTGA AATCGCTGGA CGTGGACATT
CCGCACGGCA AATTCAACGT GATTACCGGC GTGTCCGGTT CGGGCAAGTC CACGCTCGCT
TTCGACATTC TGTTCCACGA AGGACAGCGC CGTTACCTCG AATCGCTGAA CGCCTACGCG
CGTTCCATCG TGCAGCCGGC GGGGCGTCCC GAGGTCGACG CGGTGTACGG CATTCCGCCG
ACCGTCGCGA TCGAACAGCG GCTCTCGCGC GGCGGCCGCA AGAGTACGGT CGCGACCACG
TCCGAGGTGT GGCACTTCCT GCGTCTGCTG TATGTGAAGC TCGGTCTGCA GCATTGCATT
CACGACGGCA CGCCGGTCAC GTCGCAGAGC GTCGAATCGA TCGCGGCGCA GTTGCTGCGC
GATCACAAAG GGCAGCATGT CGGTTTTCTG GCGCCGCTGG TCGTGAATCG TAAAGGCGTC
TACACGGATC TGGCGAAGTG GGCGAAGGCG CGTGGCAATA CCCATCTGCG TGTGGATGGC
GAATTCGTGC CGGTGGACCC GTGGCCGAAG CTCGACCGTT TCCGCGAACA TACGATCGAG
TTGCCGGTGG CCGATCTCGT CGTGTCGCCG GACAATGAAA CCGAACTGCG TCGGGCGCTC
GATCAGACGT TGGAAGTCGG CAAAGGCGTG ATGCATCTGC TGGCGCCTTT AGACGGTTTG
CACGACGCGA TCAGCGGCGG CCGCGCCACG GCGAAACTCG GCGCGGTCAA GGTGCTGTCC
ACCAAGCGTG CGTGTCCGAC GTGCGGCACG AGTTATCCGG AACTCGATCC GCGCATGTTC
TCGTACAACA GCAAGCATGG CTGGTGTACC ACCTGCGTCG GCACGGGTCT CGCGCTCACG
CGCGAACAAC GCGCGGTGTA CGACGATACG ATTGTCGTCG ACGACAATCG TGGCCGCGAG
CAAAGCCTGC CGTCGGAAGA GCAGGAGCCC GAAGGTCTCG TGGACGAACC GTGTCCGGAT
TGCGCCGGCA CGCGTCTGAA TCCCACGGCA CGCGCGGTCA CGTTCGACAC GCAGGCGATT
GTCGATGTCG CGCAATGGAC CGTATCCGAC ACGCGCGCCT GGATCGACAC GCTGGAAATG
ACCGGTCGCG ATGCGGAAAT CGCGCGTGAC GTAGTGAGCG AAATCGGCAG CCGTCTGCAG
TTTCTCGAAG AAGTGGGCCT CGGCTATTTG AGTCTCGATC GTGCGGCGCC GAGTCTGTCG
GGCGGCGAAG CGCAGCGCAT CCGGCTTGCC GCGCAGCTCG GCAGCAACCT GCAAGGCGTC
TGCTATGTGC TCGACGAACC GACCATCGGT CTGCATCCGC GCGACAACCA GATTCTGCTG
AACGCTTTGC GCAAGCTCGG TGAAAAGGGC AATACGCTGG TGGTCGTCGA GCACGACGAG
GACACGATCC GGCGTGCCGA TCACATCATC GACATCGGCC CGGGCGCTGG CAAACGCGGC
GGCACGCTGG TCGCGCAAGG CAGTGTGGCG GATCTGTCGG CGCAGCCCGA TTCGCTGACC
GGACAGTTTC TCGCGCAGCC CATCGTGCAC CCGCTGCAGC CGCGTCGCGA AGTGGTCGCG
CCGGGCAAGC GCACGGCCGC GGTGCCGGAG AACTGGCTGA CCGTGCATGG CGGCAAGTTG
CATAACTTGC GCAACGTTAC GGTCGGCATT CCTTTGTCGC GACTCGTCGC GGTCACTGGC
GTCAGCGGTT CCGGCAAATC GACGCTCGCA CGCGACGTGC TGATGAGCAA CCTGCTGGAT
GCCGTCGGGC GTTCGGTGTT GTCATCGCCG GCCACGCGGC GCGCGCGCGC GGCGGCCGAA
GAAAAACCGG CAGCGAACCG GCGTTCCAGC GTGCTGGCGC GTACGGCGCC GCGCGCGCCG
CTAAACGTTA CGCATGCGTG GCAAGGCTGC GATTCGATCA CCGGCTGGGA AACCATCGAC
CGCGTACTCG AGGTCGATCA AACGCCGATC GGCAAGACAC CGCGTTCGTG TCCGGCCACT
TACATCGGCG TGTGGGACGC AATCCGCAAG CTGTTCGCCG GCACGCTCGA AGCGCGCGCG
CGTGGCTATA CGGCCTCGCG TTTCTCGTTT AACACCGGCG AAGGCCGTTG CCCGGCTTGC
GAGGGGCAGG GCGTGCGTAC CATCGGCATG AGCTTCCTGC CCGATGTGAA GGTGCCTTGC
GACGTGTGTC ACGGGCAGCG CTTCAATCCG GAAACGCTCG CGGTTACGTG GCGCGGCAAG
AATATCGGCG ACGTACTGAC CATGGAAATC GACGAAGCCG TCGAGTTCTT TGCGCCCATC
ACGAATATTG CTCATCCATT GCAGTTGATG AAAGACGTAG GGCTTGGCTA TCTCACGCTG
GGTCAGCCGT CGCCCACGTT GTCCGGCGGC GAGGCGCAAC GTATCAAGCT CGTTACCGAA
TTGAGCAAGG TGCGCGACGA CATTACGCGG CGCGGGCAGA AGCCGCCGCA TACGCTATAT
GTGCTGGACG AACCGACCGT GGGCCTGCAT ATGGCCGACG TCGCCAAGCT GATTCGCGTG
CTGCATCGTC TCGCGGACGG CGGCCATAGC GTCGTTGTCA TCGAGCACGA TCTGGATGTG
ATCGCCGAGG CGGACTGGAT CATCGACCTC GGTCCTGAAG GCGGCGTAGG CGGTGGGGCG
ATTGTCGCTG CTACGGATCC CGAAGGACTG TCGCGCGTTG CGGCGAGTCA CACGGGCGCC
GCGTTACGGC CGGTTCTCGC ACGATCGCGT AACAACAGTG CTGTCGTGGC GGGCGAGGGT
ACGAACGGTT AA
|
|---|
| Protein sequence | MAHSFRRSEK LASNGKNGKN GSSSINGTIK IRGARQHNLK NVDLDVRTGE MTVVTGPSGS
GKSSLVFDTL YAEGQRRYVE TFSAYARQFL DRMDRPQVDR VDGVPPAIAI DQTNPVRSSR
STVGTMTELN DHLKLLYARA AELFDRKTAH QVRHDTPETI YAELLERTAQ NEPRLVVTFP
VELPESASEQ EVEQWLSASG YTRVQAQREV DSPTGKRKLL DVVADRFRLR SVDKQRVVEA
IEASLKRGGG RVNIYVLPAS PEGPESQEAE PQIWRFSTGL HSPESDLRYA DPQPALFSFN
SAYGACEVCR GFGRVIGVDL GLVIPDARKT LRDGAIKPMQ TPAWKECQDD LMRYAAKADI
RRGTPWGELT DAERDWVING SPDWNGKWQS HWYGVKRFFE YLESKAYKMH IRVLLSKYRS
YTPCETCGGA RLKTESLLWR LGSKANADDV LPAAKRFLPR GVDWTRGQLE ALPGLTVHDL
MLMPIERIRH FFDEISLPSA LLDDALKLLL AEVRTRLKYL CDVGLGYLTL DRQSRTLSGG
EVQRINLTTA LGTSLTKTLF VLDEPSIGLH PRDLNRIVEA MHRLRDAGNT LVVVEHDPSV
MLAADRLIDM GPGPGERGGS IIYDGAPEAI RSSGTLTGEY LGGRRHVADA AHWSQRPVDA
TTPRIVLEGA TEHNLLDVTV EIPLERLVCV TGVSGSGKST LLQDVLYPAM ARHFGLATES
PGAFRSLSGA DQVTDVVFVD QSPIGKTARS NPASYVGAFD EIRKLFAKAP LAQQRGYGPG
MFSFNSGEGR CPTCGGSGFE HIEMQFLSDV YLRCPDCDGR RYRAELLEVK IERGEPARAL
SIADVLELTV SEATTYFAKD AEVLRVLQPI VDVGLEYVKL GQPVPTLSGG EAQRLKLAGF
LAESAQARTA RSAKQAVAKR LFMFDEPTTG LHFDDIAKLM QAFGKLLASG HSLIVIEHNL
DVIRAADWLI DLGPEGGDGG GRVLCAGTPE DVKTCSESHT GEALLQYDRA MGAAAEPASQ
GIPLQKALSA ARARRAIEGE DVVRIVNARE HNLKSLDVDI PHGKFNVITG VSGSGKSTLA
FDILFHEGQR RYLESLNAYA RSIVQPAGRP EVDAVYGIPP TVAIEQRLSR GGRKSTVATT
SEVWHFLRLL YVKLGLQHCI HDGTPVTSQS VESIAAQLLR DHKGQHVGFL APLVVNRKGV
YTDLAKWAKA RGNTHLRVDG EFVPVDPWPK LDRFREHTIE LPVADLVVSP DNETELRRAL
DQTLEVGKGV MHLLAPLDGL HDAISGGRAT AKLGAVKVLS TKRACPTCGT SYPELDPRMF
SYNSKHGWCT TCVGTGLALT REQRAVYDDT IVVDDNRGRE QSLPSEEQEP EGLVDEPCPD
CAGTRLNPTA RAVTFDTQAI VDVAQWTVSD TRAWIDTLEM TGRDAEIARD VVSEIGSRLQ
FLEEVGLGYL SLDRAAPSLS GGEAQRIRLA AQLGSNLQGV CYVLDEPTIG LHPRDNQILL
NALRKLGEKG NTLVVVEHDE DTIRRADHII DIGPGAGKRG GTLVAQGSVA DLSAQPDSLT
GQFLAQPIVH PLQPRREVVA PGKRTAAVPE NWLTVHGGKL HNLRNVTVGI PLSRLVAVTG
VSGSGKSTLA RDVLMSNLLD AVGRSVLSSP ATRRARAAAE EKPAANRRSS VLARTAPRAP
LNVTHAWQGC DSITGWETID RVLEVDQTPI GKTPRSCPAT YIGVWDAIRK LFAGTLEARA
RGYTASRFSF NTGEGRCPAC EGQGVRTIGM SFLPDVKVPC DVCHGQRFNP ETLAVTWRGK
NIGDVLTMEI DEAVEFFAPI TNIAHPLQLM KDVGLGYLTL GQPSPTLSGG EAQRIKLVTE
LSKVRDDITR RGQKPPHTLY VLDEPTVGLH MADVAKLIRV LHRLADGGHS VVVIEHDLDV
IAEADWIIDL GPEGGVGGGA IVAATDPEGL SRVAASHTGA ALRPVLARSR NNSAVVAGEG
TNG
|
|---|
| |