| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1426 |
|---|
| Symbol | |
|---|
| ID | 6282612 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 1595113 |
|---|
| End bp | 1596837 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642620992 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001895065 |
|---|
| Protein GI | 187923423 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGC CCGCCAATTT GCCGCAACAG TTGGACCACA TGCTTCGGCA AGCCGTCGCG
CTTCAGCAGA ACGGCGCATT CGCCGAGGCA GAAGAACTCT TTCGCGAGAT CCTCGAACTC
AAGCCCCGTC ATTTCGACGC GCTGCAATTG CTCGGCGCGT TGGCGCTGCA AGCGGGCCGC
TTGCAAGAGG GCGTCGAGTT ACTTGGAAAA GCGCTTGCCA TCAACGCGAA ACAGGCACCG
CTTCATTCCA ATCTCGCGTA TGCGTTGAAC GTCCTGCAGC GTTTCGACGA AGCCCTTGCG
AGCGCCGATC GGGCGCTCGC CTTGCAGCCC AAATTCCCCG ATGCACTCAA CAACCGCGGC
AACGCGCAAG CCGGCCTGAA CCGGCCGCTC GATGCACTCG GCAGCTTCGA TCGCGCAATT
GCGTTGAACC CGGATTTCGC GCAGGCCTGG AATAACCGCG CGTGCGTGCT GCGCGATCTG
GGCCGTCCCG CCGACGCGCT CGCAAGCTGC GATCACGCGC TCGCGCTGCA ACCGGGTTAT
CCCGACGCGT GGAGCAATCG CGGCAATGCC TTCAGCGACC TGAACCAGCC GGAAGAAGCG
GAGCGCTGCT ACCGTCGCGC GCTGGAATTG GCGCCCGCAT TCGCCGACGC CTGGAACAAC
CTCGGCCTCA CGCAGATCGA TCTCAACCAG CACGCACAAG CGCTCGTGAG TTACGAACGC
GCTCTGGCCG TGAATTCCGA TGCCGCGGAA ACACATTGGA ATGAATCACT GTGCCTGCTG
CAAATGAGAC AGCTCGAAGC CGGCTGGCAA AAATATGAAT GGCGCTGGGA GCGCAGCCGC
ATCAAGGCAA GCCGGCGCAG TTTTGCGGAA CCGCTTTGGC TCGGCGATTT TTCGATCGAC
GGCAAGACGA TTCTGTTGCA CGCGGAGCAG GGTCTCGGCG ACACGCTGCA GTTTTGCCGC
TATGCCGCGC TGGTGTCGAA ACTCGGCGCG AAGGTCGTGC TCGAAGTGCC ACGCGAACTG
ATGCGTCTCA TGGCCACGCT CGACGGTGTG GACCAGTTGA TCGAAGCGGG TCAAACGCTG
CCATCGTTCG ATTGTCACTG CCCGCTGCTG AGTTTGCCGC TCGCATTCAA GACGGGTCTC
GACAGCATTC CATCGAACAC GCCTTATCTC TGCGCGGACG CCGAAGCGGC TCGCCAATGG
CGCGAGCGGC TTCACGCGCC AGCAGACGCG CGCCTCAAAG TCGGACTCGT ATGGGCAGGC
GGCAACCGTC CGCATGTCGC CGAACTTCGT AAGAACGATG CGCGCCGTTC GATCGCATTC
GCACGACTCG CGCCGCTTCT CGACGTGCCG AACGTGCGGT TCTTCAGCCT GCAAAAAGGA
CCGGCGGCGC AGCAACTCGA AAGCGACGAG CGGGGCGGAC GTGTGATCGA CTACACGGGA
GAACTCGACG ACTTCGCCGA CACTGCGGCA TTGGTGGCGA ACCTCGATCT GGTGATTTCC
GTGGACACGT CCACCGCGCA TCTGGCTGGC GCACTCGACA AACCGGTCTG GATTCTGAAC
CGCTTCGACA CCTGCTGGCG GTGGATGCTG GAACGCACGG ATACACCGTG GTATCCGCGT
GCCCGGTTGT TCCGGCAACC CGCGCTCGGC GATTGGGACA GTGTGATGAT GGCCGCGCGT
GATGCGCTGA ACGCATTGGC GGCGGGAGCG ATGCATCCAC GATAG
|
|---|
| Protein sequence | MSKPANLPQQ LDHMLRQAVA LQQNGAFAEA EELFREILEL KPRHFDALQL LGALALQAGR
LQEGVELLGK ALAINAKQAP LHSNLAYALN VLQRFDEALA SADRALALQP KFPDALNNRG
NAQAGLNRPL DALGSFDRAI ALNPDFAQAW NNRACVLRDL GRPADALASC DHALALQPGY
PDAWSNRGNA FSDLNQPEEA ERCYRRALEL APAFADAWNN LGLTQIDLNQ HAQALVSYER
ALAVNSDAAE THWNESLCLL QMRQLEAGWQ KYEWRWERSR IKASRRSFAE PLWLGDFSID
GKTILLHAEQ GLGDTLQFCR YAALVSKLGA KVVLEVPREL MRLMATLDGV DQLIEAGQTL
PSFDCHCPLL SLPLAFKTGL DSIPSNTPYL CADAEAARQW RERLHAPADA RLKVGLVWAG
GNRPHVAELR KNDARRSIAF ARLAPLLDVP NVRFFSLQKG PAAQQLESDE RGGRVIDYTG
ELDDFADTAA LVANLDLVIS VDTSTAHLAG ALDKPVWILN RFDTCWRWML ERTDTPWYPR
ARLFRQPALG DWDSVMMAAR DALNALAAGA MHPR
|
|---|
| |