Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_1413 |
Symbol | |
ID | 6283097 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 1578332 |
End bp | 1579855 |
Gene Length | 1524 bp |
Protein Length | 507 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642620978 |
Product | hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit |
Protein accession | YP_001895052 |
Protein GI | 187923410 |
COG category | [C] Energy production and conversion |
COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0515679 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.0934254 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGTCA TCAAACAGGA AGATCTGATT CAGAGCATTG CTGATTCGCT TCAGTACATC AGCTACTACC ATCCGCTCGA CTACATCCAG GCTCTCGGCC GCGCCTACGA GCTCGAACAG AGCCCCGCCG CGAAAGACGC CATCGCGCAG ATTCTCACCA ACAGCCGCAT GTGCGCCGAA GGCAAGCGCC CGATCTGCCA GGACACCGGC ATCGTCACGG TGTTCGTGAA GGTCGGCATG GACGTGCGTT GGGACGGCGC GACGATGGGC GTCACCGACA TGATCAACGA AGGCGTGCGC CGTGGTTATC TGAACCCGGA CAACGTGCTG CGCGCGTCGA TCGTGAGCCC GCCGGAAGGT GGCCGCAAGA ACACGAAGGA CAACACGCCG GCCGTGATCC ACTACGAGAT CGTGCCGGGC AATACGGTCG ACGTGCAGGT CGCGGCCAAG GGCGGCGGCT CGGAAAACAA GTCGAAGTTC GCGATGCTGA ATCCGTCGGA TTCGATCGTC GACTGGATTC TCAAGACCGT GCCGACCATG GGCGCGGGCT GGTGCCCGCC GGGCATGCTC GGCATCGGTA TCGGCGGCAC CGCTGAAAAA GCGATGGTGA TGGCGAAGGA ATCGCTGATG GATCCGATCG ACATTCAGGA CGTGATCGCA CGCGGCCCGA AGGACTGGAT CGAAGAACTG CGCGTGGAAC TGCACGAGAA GGTCAACGCG CTCGGCATCG GCGCGCAAGG TCTGGGCGGC CTCGCCACCG TGCTCGACGT GAAGATCATG GCCGCGCCGA CGCACGCCGC GAGCAAGCCG ATCGCGATCA TCCCGAACTG CGCGGCTACG CGTCACGCAC ACTTCACGCT GGACGGTTCA GGCGTCGCCA AGCTCGAAGC GCCGTCGCTC GACGCATGGC CGAAGGTGCA GTGGGAACCG GATACCGAGA AGAGCAAGCG CGTCGATCTG AACACGCTCA CGCCGGAAGA AGTCGCCGCG TGGACGCCGG GCCAGACGCT GCTGCTGTCG GGCAAGATGC TGACAGGCCG TGACGCGGCT CACAAGCGCA TCGCCGATAT GCTGGCCAAG GGCGAGAAGT TGCCGGTCGA CTTCACGAAC CGCGTGATTT ACTACGTCGG CCCGGTCGAT CCGGTGCGCG ATGAAGCCGT CGGTCCCGCG GGCCCGACCA CGGCAACGCG CATGGACAAG TTCACCGAGA CGATGCTGTC GCAAACCGGC CTGATCTCGA TGATCGGCAA GGCGGAACGC GGCCCGGTCG CCATCGAGGC GATCAAGAAG CACAAGGCGG CGTATCTGAT GGCCGTGGGC GGCGCGGCGT ACCTCGTGTC GAAGGCGATT CGCAGCGCGA AGGTTCTCGC GTTCGAAGAC CTCGGCATGG AAGCGATCTA CGAGTTCGAC GTGCAGGACA TGCCGGTGAC CGTGGCCGTC GATTCGAACG GCACTTCCGT TCATCAAACC GGGCCGAAGG AATGGCAAGC AAAGATCGGC AAGATTCCGG TCGCGACAGT TTGA
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Protein sequence | MTVIKQEDLI QSIADSLQYI SYYHPLDYIQ ALGRAYELEQ SPAAKDAIAQ ILTNSRMCAE GKRPICQDTG IVTVFVKVGM DVRWDGATMG VTDMINEGVR RGYLNPDNVL RASIVSPPEG GRKNTKDNTP AVIHYEIVPG NTVDVQVAAK GGGSENKSKF AMLNPSDSIV DWILKTVPTM GAGWCPPGML GIGIGGTAEK AMVMAKESLM DPIDIQDVIA RGPKDWIEEL RVELHEKVNA LGIGAQGLGG LATVLDVKIM AAPTHAASKP IAIIPNCAAT RHAHFTLDGS GVAKLEAPSL DAWPKVQWEP DTEKSKRVDL NTLTPEEVAA WTPGQTLLLS GKMLTGRDAA HKRIADMLAK GEKLPVDFTN RVIYYVGPVD PVRDEAVGPA GPTTATRMDK FTETMLSQTG LISMIGKAER GPVAIEAIKK HKAAYLMAVG GAAYLVSKAI RSAKVLAFED LGMEAIYEFD VQDMPVTVAV DSNGTSVHQT GPKEWQAKIG KIPVATV
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