Gene Bphyt_1393 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_1393 
Symbol 
ID6284398 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp1560127 
End bp1560924 
Gene Length798 bp 
Protein Length265 aa 
Translation table11 
GC content61% 
IMG OID642620958 
Product3-hydroxybutyrate dehydrogenase 
Protein accessionYP_001895032 
Protein GI187923390 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01963] 3-hydroxybutyrate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0890604 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.00200504 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCGTCAA CGAACACGAA TCTGAATGGC AAGGTTGCGG TTGTTACGGG CGCCGCAAGC 
GGCATCGGCA AGCAGATTGC GCTGACTCTT TCCGCAGCAG GCGCGGCTGT CGCGATCGCC
GACCTGAATC AGGACGGCGC GAACGCTGTC GCTGAAGAAA TCAAAAAGGC CGGCGGCAAG
GCAATCGGCG TGGCGATGGA CGTCACGAGC GAAGACGCCG TCAATCAGGG CATCGACAAA
GTGGCCGCGG AACTCGGCTC GGTGGATATC CTCATTTCCA ACGCCGGCAT CCAGATCGTC
AATCCGATCG AAAACTATTC GTTTTCGGAT TGGAAGAAGA TGCAGGCAAT CCACGTGGAC
GGCGCGTTCC TGACCACCAA GGCCGCGCTC AAGCACATGT ACAAGGACGA TCGCGGCGGC
ATCGTGATCT ACATGGGCTC GGTCCACTCG CACGAAGCGT CGCCGCTCAA ATCGGCCTAT
GTGACGGCCA AGCACGCGCT GCTGGGTCTC GCGCGCGTGC TGGCTAAAGA AGGCGCGAAG
CACAACGTGC GCTCGCATGT CGTGTGTCCG GGTTTCGTGC GCACGCCGCT CGTCGACAAG
CAGATTCCCG AGCAGGCCAA GGAACTGGGC ATCAGCGAGG AAGACGTGAT CAAGCGCGTC
ATGCTGGGCG GCACGGTCGA CGGTGTCTTC ACCACGGTGG AAGACGTCGC GCAAACGGTG
CTGTTCCTGT CCACGTTCCC GACGGCGGCG CTGACCGGCC AGTCCTTTAT TGTGAGCCAC
GGCTGGTACA TGCAATAA
 
Protein sequence
MSSTNTNLNG KVAVVTGAAS GIGKQIALTL SAAGAAVAIA DLNQDGANAV AEEIKKAGGK 
AIGVAMDVTS EDAVNQGIDK VAAELGSVDI LISNAGIQIV NPIENYSFSD WKKMQAIHVD
GAFLTTKAAL KHMYKDDRGG IVIYMGSVHS HEASPLKSAY VTAKHALLGL ARVLAKEGAK
HNVRSHVVCP GFVRTPLVDK QIPEQAKELG ISEEDVIKRV MLGGTVDGVF TTVEDVAQTV
LFLSTFPTAA LTGQSFIVSH GWYMQ