Gene Bphyt_1371 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_1371 
Symbol 
ID6283734 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp1529340 
End bp1530905 
Gene Length1566 bp 
Protein Length521 aa 
Translation table11 
GC content65% 
IMG OID642620931 
Product3-hydroxy-acyl-CoA dehydrogenase 
Protein accessionYP_001895010 
Protein GI187923368 
COG category[I] Lipid transport and metabolism 
COG ID[COG1250] 3-hydroxyacyl-CoA dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.00404274 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCTCTC GCAATTTCAG CATCGAGACT ATCGGCATTG TCGGAACCGG AGCAATGGGT 
CGCGGCATCG CCCAGATCGC CGCGCTGGCC GGTCTCACCG TGCGTCTGTA CGACACCAAC
CCTGCCGCGA TCGGCGCCGC GCGCGACTAT CTCGCCGAGA CTTTCGCCAA GCTGACCGCC
AAAGGCAAGC TCGATCAGGC CCGCTCGCTT GCCGCACTTG CGAACGTAAG CGGCGCGCAG
AGCATCGGCG AGTTGGCTGG TTGCGATCTG GTTGTCGAGG CGATCGTCGA GAAACTCGAC
GTGAAACAGG CGCTGTTCCG CGAACTCGAG ACCGTCGTCA GTGGCCGCTG CGTGCTGGCG
TCCAATACGT CGTCGCTGTC CATCACGGCG ATTGCCGCCG GCTGCAGTGA CCCGTCGCGC
GTGGTCGGCT ATCACTTCTT CAATCCCGTG CCGTTGATGA AGGTCGTCGA AGTCATCGAC
GGTCTGCGCA GCGACCCCGC AGCAGGCGAC GCGTTGATGA ATCTCGCGCG CCGCATGGGA
CACACGCCGG TGCGCGCGAA AGATATGCCC GGCTTCATCG TGAATCACGC GGGCCGCGGC
ATGAATACCG AAGGCTTGCG CGTGGCCGGT GAAGGCGTGG CGAGCTTCGC CGACATCGAC
CGCATCGTGC GCGAGCAGGC GGGCTTTCGC CTCGGGCCGT TCGAGTTGCT CGATCTGACG
GCGCTGGACG TCTCGCATCC GGTGATGGAG TCGATCTACC ACCAGTTTTA TGAAGAGCCG
CGCTTCACGC CGTCGCCCAT TACCGGTACG AGGCTCGCGG GCGGACTGAT CGGCCGCAAG
ACGGGCGAAG GCTTTTATCG CTACGAAGAC GGCAAGCAGC AGGTGCCTGC CGAAGCGCCC
GCGCCGACCG GATTGCCGGC CGGCGTGTGG GTCAGCAAGC GTTATCCGCA AGCTCACGAC
GCGGTCGTGC AACTCATCGA GAAAGCCGGC GTGAAGCTCG ACGACGGTGC CACGCCCGCG
GCGAACTCGC TGATCGTCGT CACGCCGTTC GGCCACGACG CGACCACGGC CGCGGTCGAT
GAAGCGCTGG ACGCGACCCG CGTCGTCGCA ATCGATGCGC TCTTCCCGCT CGTCGGCGCG
CAACGCCGCA CACTGATGAC AACGCCCGCC ACCACGCGCA CCGCGCGTGA CACGGCGCAT
GCGCTGTTCG CCGCCGACGG CGTGCCCGTC ACCGTGATCC GCGACTCGAC CGGCTTTGTC
GCGCAACGCG TGGTGGCGAC TATCGTCAAC ATCGGCTGCG ACATCGCGCA AAAACAGATC
GCCACACCCC AAGACATCGA TCTCGCCGTG ACACTCGGCC TCGGCTACCC GCGCGGCCCG
CTAGGCCTCG GCGACGCGCT CGGCTCGACG ACCATTCTCA CGATCCTGCG CAACATGTTC
AGTGTGCTTG GCGATCCGCG CTATCGCCCT TCGCCTTGGC TCGCGCGGCG AGCGCAACTG
GGCATGTCGT TGACCCAACG CGATGCAGCC GACCTCGAAA CGAAGACTCA GGAGACACAA
CAATGA
 
Protein sequence
MTSRNFSIET IGIVGTGAMG RGIAQIAALA GLTVRLYDTN PAAIGAARDY LAETFAKLTA 
KGKLDQARSL AALANVSGAQ SIGELAGCDL VVEAIVEKLD VKQALFRELE TVVSGRCVLA
SNTSSLSITA IAAGCSDPSR VVGYHFFNPV PLMKVVEVID GLRSDPAAGD ALMNLARRMG
HTPVRAKDMP GFIVNHAGRG MNTEGLRVAG EGVASFADID RIVREQAGFR LGPFELLDLT
ALDVSHPVME SIYHQFYEEP RFTPSPITGT RLAGGLIGRK TGEGFYRYED GKQQVPAEAP
APTGLPAGVW VSKRYPQAHD AVVQLIEKAG VKLDDGATPA ANSLIVVTPF GHDATTAAVD
EALDATRVVA IDALFPLVGA QRRTLMTTPA TTRTARDTAH ALFAADGVPV TVIRDSTGFV
AQRVVATIVN IGCDIAQKQI ATPQDIDLAV TLGLGYPRGP LGLGDALGST TILTILRNMF
SVLGDPRYRP SPWLARRAQL GMSLTQRDAA DLETKTQETQ Q