Gene Bphyt_1346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_1346 
Symbol 
ID6282442 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp1504735 
End bp1505988 
Gene Length1254 bp 
Protein Length417 aa 
Translation table11 
GC content59% 
IMG OID642620906 
ProductNADH dehydrogenase subunit D 
Protein accessionYP_001894985 
Protein GI187923343 
COG category[C] Energy production and conversion 
COG ID[COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7 
TIGRFAM ID[TIGR01962] NADH dehydrogenase I, D subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00313693 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.00709586 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCAGAGA TCAAGAACTA CACGCTCAAC TTCGGCCCTC AGCACCCGGC AGCGCACGGT 
GTGCTGCGCC TCGTGCTCGA GCTCGACGGC GAAGTCATTC AGCGCGCCGA TCCGCACATC
GGTCTGCTGC ATCGCGCGAC TGAAAAGCTC GCCGAAACCA AAACATTCAT CCAGTCGGTG
CCGTACATGG ACCGTCTCGA CTACGTGTCG ATGATGGTCA ACGAGCACGG CTATGTGATG
GCGATCGAAA AGCTGCTCGG CATCGAAGTG CCGGTGCGCG CGCAATACAT TCGCGTGATG
TTCGACGAAG TCACGCGCGT GCTGAACCAC CTGATGTGGA TCGGCGCGCA CGCGCTCGAC
GTCGGCGCAA TGGCGGTGTT CCTGTACGCG TTCCGTGAGC GCGAAGACTT GATGGACGTG
TACGAAGCGG TGTCCGGCGC ACGGATGCAC GCGGCTTACT ATCGTCCGGG CGGCGTCTAT
CGCGATCTGC CTGACGCAAT GCCGCAATAC AAAGCGTCGA AGATTCGCAA TGCCAAGGCA
TTGTCGAAGA TGAACGAGAA CCGTCAGGGT TCGCTCCTCG ACTTCATCGA CGATTTCTTC
ACGCGGTTCC CGAAGTGCGT CGACGAATAC GAAACGCTGC TGACCGACAA CCGGATCTGG
AAGCAACGTC TGGTCGGTAT CGGCGTGGTC AGCCCGGAAC GCGCGCTGAA TCTCGGCATG
ACCGGCGCGA TGCTGCGTGG TTCGGGTATC GAATGGGATC TGCGCAAGAA GCAACCTTAT
GAGGTCTATG ACAAGCTCGA TTTTGACATC CCGGTGGGGG TCAACGGCGA CTGTTATGAC
CGATATTTGG TACGCGTCGA AGAAATGCGC CAGTCCACAC GCATTGTGAA ACAGTGCATT
GAGTGGCTGC GTAAGAATCC CGGCCCCGTG ATGATCGACA ATCACAAGGT TGCGCCGCCG
TCGCGCGTGG GCATGAAGTC GAACATGGAA GAGCTGATTC ACCACTTCAA GCTCTTCACG
GAAGGCTTCC ATGTTCCGGA AGGCGAGGCA TACGCCGCGG TCGAGCATCC GAAGGGCGAG
TTCGGCATCT ATCTGATCTC CGACGGCGCT AACAAGCCGT ATCGCCTGAA GATCCGCGCG
CCGGGCTACG CTCACCTGTC CACGCTCGAT GAAATGGCGC GCGGTCACAT GATCGCCGAC
GCCGTGACGA TCATCGGCAC GCAGGACATC GTGTTCGGCG AAGTGGATCG CTAG
 
Protein sequence
MAEIKNYTLN FGPQHPAAHG VLRLVLELDG EVIQRADPHI GLLHRATEKL AETKTFIQSV 
PYMDRLDYVS MMVNEHGYVM AIEKLLGIEV PVRAQYIRVM FDEVTRVLNH LMWIGAHALD
VGAMAVFLYA FREREDLMDV YEAVSGARMH AAYYRPGGVY RDLPDAMPQY KASKIRNAKA
LSKMNENRQG SLLDFIDDFF TRFPKCVDEY ETLLTDNRIW KQRLVGIGVV SPERALNLGM
TGAMLRGSGI EWDLRKKQPY EVYDKLDFDI PVGVNGDCYD RYLVRVEEMR QSTRIVKQCI
EWLRKNPGPV MIDNHKVAPP SRVGMKSNME ELIHHFKLFT EGFHVPEGEA YAAVEHPKGE
FGIYLISDGA NKPYRLKIRA PGYAHLSTLD EMARGHMIAD AVTIIGTQDI VFGEVDR