| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1278 |
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| Symbol | |
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| ID | 6283479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 1434680 |
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| End bp | 1436377 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642620837 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001894917 |
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| Protein GI | 187923275 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.533493 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0709099 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGTCC CCCTCTACGC CGAAACGCGT ACGCGCGATG CCGCGCTTGC ATCGGCGCCT
TACGGCATGT TTACCTGCAC TGCGGACGGC ACGTTCGACT GCGTCAACGC CGCTTTCGAA
AAGCTGACGG GACTGGCGGC TGAAGAACTG ATCGGCCGGC GCACCTTCGA GTCTTTGTTC
GATCCGGCCG AACTGGCCAA GCGTCGCGCC GAACTGCCGT CGCTTGCCAT GGTGACTTCG
CGCTATGAAG GCGAGTGGAG CTTCTTGCGA CGCAACGGCA CGCCGGTTCG CGTTGTGCTG
GCGTTGGCGC CGCTCGTCAC CGAGCCCGCG CGGACCGCTT GTCCCGCGCT GTATGTGGGC
ATCGCCATCG ACATGACGCG TTACGCGCAA TCGGAAGCGC GTCTCTGGTA CGTCGCGCAT
CACGACGGCG TGACCCGCCT GCCGAATCAA ACGCTTTTCA CCGAACGGCT GGAACTCACG
ATCGCGCGTT GCGAGCGTAG CGGCAGCGGT TTTACCGTGC TGATCGCCGA GCTCGATCAT
CTGCGCAAAC TGCGCGACGC GCTCGGCTTG CATGCGGCCG AACTCGTGCT GCAAATCGTC
GGCGAACGGT TGCGCGGTCT TTTTCCGAAC GACGGCACGA TCGCCTCGAT CGGCGGCACG
CAGTTCGCAT TGCTGGTCAA CGAAACCGGC CCGGCGGCCG ATGCGTTCGC CGCCGAAGCG
CTGGGCCGCA TTGCCGAGGC GATCGATTAC GCCGGCACCG CGTTGAACAT TACCGCGAGC
ATCGGCATCG TGGCGTATCC GGCCGACGGC GGCGATGCGC CTACGCTGAT GCGCCGCGCG
GGCGTGGCGT TGTCGGCGGC CTCGGCGGTG AACGGCAATG CGGTGCGGCG CTTTTCCACC
GCGCTCGAAG GCCAGGCCGC GCGCCGCTTC GAACTGCAGA CCATGTTGCG CGACGCAATC
GATCGTCAGC AACTGCATCT CGTGTATCAA CCGCAGGTCA CGCTCTCCAA CGGCCATATC
GCGCAGGTGG AGGCGCTGCT GCGCTGGAAC CACCCGCAAC GCGGCCTGAT CAGTCCCGTC
GAATTCGTGC CGGTTGCGGA GGAGGCGGGC TTGATCGAGC AGATCGGCGA GTGGGTGATC
CGGACCGCGT GCCGCGATGC CGGCAAGTTG CTGCGGCTGA CGGGCAACTT GCCGCGCTTC
GCGGTGAACG TCTCGCCGCA GCAGTTCCAG CGGCACAATC TGTTCGAGAC CATCCGCGAG
GCGTTGGAAG ATGCCGCACT CGACCCGTCG TATCTCGAAG TGGAAATCAC CGAGGGCGTT
CTGCTCGGCG ACACCGAACA GGCGTTGCAG ACGCTCTTTG CATTACGCGA TCTGGGCGTG
GAGGTGGCGG TAGACGACTT CGGCACCGGC TATTCGAGCC TCGCTTATCT GACGCGCTTT
CCGTTGAATC GCCTGAAAAT CGACCGCTCG TTTGTGATGC GCATGAGCAC CGATCCGCAG
TGCGCGGCGC TGGTGGGCGC CATCATCGCG ATGGCGCACG CGCTCAAACT GCGCGTGACG
GCCGAAGGCG TCGAAACGGC GGAGCAGGCC GCGCAACTCG AAGCGCTCGG TTGCGATGAA
GCGCAAGGCT TCTGGTTTTC GCGGCCGATC ACCGTTGCGG CACTGCGTAA TCTGTTGAGG
CCCTTGGGCA CTCTCTGA
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| Protein sequence | MQVPLYAETR TRDAALASAP YGMFTCTADG TFDCVNAAFE KLTGLAAEEL IGRRTFESLF
DPAELAKRRA ELPSLAMVTS RYEGEWSFLR RNGTPVRVVL ALAPLVTEPA RTACPALYVG
IAIDMTRYAQ SEARLWYVAH HDGVTRLPNQ TLFTERLELT IARCERSGSG FTVLIAELDH
LRKLRDALGL HAAELVLQIV GERLRGLFPN DGTIASIGGT QFALLVNETG PAADAFAAEA
LGRIAEAIDY AGTALNITAS IGIVAYPADG GDAPTLMRRA GVALSAASAV NGNAVRRFST
ALEGQAARRF ELQTMLRDAI DRQQLHLVYQ PQVTLSNGHI AQVEALLRWN HPQRGLISPV
EFVPVAEEAG LIEQIGEWVI RTACRDAGKL LRLTGNLPRF AVNVSPQQFQ RHNLFETIRE
ALEDAALDPS YLEVEITEGV LLGDTEQALQ TLFALRDLGV EVAVDDFGTG YSSLAYLTRF
PLNRLKIDRS FVMRMSTDPQ CAALVGAIIA MAHALKLRVT AEGVETAEQA AQLEALGCDE
AQGFWFSRPI TVAALRNLLR PLGTL
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