| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1255 |
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| Symbol | |
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| ID | 6281931 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 1409581 |
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| End bp | 1411374 |
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| Gene Length | 1794 bp |
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| Protein Length | 597 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642620814 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_001894894 |
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| Protein GI | 187923252 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.261223 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.738985 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGCGCGA AGCCAACGTT AAGCAAACCC ATCGGTTCAG GCGAGGCGTC GTCGGCCGCC
GTCGTCTTTA AACGGCTCTG GCCGTACATC CAGCCGCTGA TCTGGGTTCT CCTCGGCGCA
ATCGTCGCAA TGGCCGTCAG CGCCGCCACC GACGCGGCGA TCCCCGCCTT GCTCAAGCCT
CTGCTGGACA AGGGCTTCGG CGCCCACGCC AACGACAAGA CCAAGTGGTT CGTGCCGGCC
GCGGTGATCG GCCTCGCCCT GGTTCGCAGC CTGTCGCAAT ACGCGTCCGG GTATCTGCTT
GCCTACGTGA CGAACAAGAT CCTGCTCGAC CTGCGCCTGA AGATGTTCAG CCGCATGATT
CACACGAGCG TCGCGTTCTT CCAGCGCGAA ACCGCGAGTA CGGTCATCAA TGCGATCGTC
TTCGAGGTGA ACCAGATTCT CAACGTGCTG CTGAGCGTGC TGGTCACTCT GGTGCGCGAT
TCGCTCACGG TGGTCTTCCT GCTCGGCTAT CTGTTCTATC TGAACTGGCG TCTGACGCTG
ATCGTCGCGG TGCTGCTGCC GGCCATCGGC TGGCTGGTCG GCAAGATCAA CCGCCGTTTG
CGCCGTCTGA ACCGCGAGCA TCAACTGTTG ACCAATGAGC TTTCGTACAT CGTCGAAGAA
TCCGTGGGTG GCTACAAGGT CGTCAAGGTG CACAACGGCG AACAGTACGA GATGGACCGC
TTCGAGTCGA TGAGCAAGCG TCTGCGCGGC TATGCCATGC GCATGACCGT GTCGGGCGGC
CTCGCGCAGC CGTTGACTCA GTTCCTCGCG TCGATCGCGC TCGCTGTCGT GATTACGATC
GCGGTGGTGC AGTCGTCGTC GGACCAGACC ACGGTCGGCG GTTTCGTCGC CTTCGTCACG
TCGATGCTGC TGATCATCTC GCCGCTCAAG CATCTGATGG ACGTGAACCA GCCGCTGCAA
CGCGGCATGA CGGCGTGCGA ACTGATCTTC GGTCTGATCG ACGAGCCGTC CGAGCCGGCA
GGCGGCGGCA AGCCGCTCGA GCGCGCGCGC GGCGAAGTGG AATTCCGCGA CGTCTCGTTC
AACTACAGCG CCAACGCCAC GCACAACCGC CACACGCTCG ACCAGGTGTC GTTCAAGGTG
GCGCCGGGCG AAATGGTCGC GCTCGCGGGC CCATCGGGCA GCGGCAAGAC CACGCTGGTG
AATCTGCTGC CGCGCTTTTT CGATCCGACC GCCGGCCAGA TTCTGGTCGA CGGCGTGGCG
ATCCCCGAAT ACGATCTGCA CGCGTTGCGC AGTCAGATCG CGATGGTGAG CCAGGACGTG
GTGCTGTTCA ACGACACGGT CGCCAATAAC GTCGCCTACG GCCAGACCGC GGATCCCGAC
AAGGTCAAGG CTGCGCTGCG CGCGGCCAAT CTGTGGGACA CCGTCGAGGC CATGCCGAAA
GGCATCGACA CACTGGTCGG CGACAACGGC TTGATGCTCT CGGGCGGCCA GCGGCAGCGT
CTGGCGATCG CGCGCGCGAT CTACAAGGAC GCGCCGATCC TGATCCTCGA CGAGGCCACC
TCGGCGCTGG ATTCCGAGTC CGAGCGCCAC GTGCAGGCCG CGCTGGAAAC CTTGATGAAG
GGCCGCACGA CACTCGTCAT CGCGCACCGC CTGTCGACTA TCGAGCGCGC CAGCCGGATC
CTCGTCATGG AAGCGGGGCG GATCGTCGAG AGCGGCAGCC ATCGCGAACT GCTGGCGCAA
GACGGGCTGT ACGCGCATCT GCACCGCATC CAGTTCCAGC AGACCGCGGC CTGA
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| Protein sequence | MSAKPTLSKP IGSGEASSAA VVFKRLWPYI QPLIWVLLGA IVAMAVSAAT DAAIPALLKP
LLDKGFGAHA NDKTKWFVPA AVIGLALVRS LSQYASGYLL AYVTNKILLD LRLKMFSRMI
HTSVAFFQRE TASTVINAIV FEVNQILNVL LSVLVTLVRD SLTVVFLLGY LFYLNWRLTL
IVAVLLPAIG WLVGKINRRL RRLNREHQLL TNELSYIVEE SVGGYKVVKV HNGEQYEMDR
FESMSKRLRG YAMRMTVSGG LAQPLTQFLA SIALAVVITI AVVQSSSDQT TVGGFVAFVT
SMLLIISPLK HLMDVNQPLQ RGMTACELIF GLIDEPSEPA GGGKPLERAR GEVEFRDVSF
NYSANATHNR HTLDQVSFKV APGEMVALAG PSGSGKTTLV NLLPRFFDPT AGQILVDGVA
IPEYDLHALR SQIAMVSQDV VLFNDTVANN VAYGQTADPD KVKAALRAAN LWDTVEAMPK
GIDTLVGDNG LMLSGGQRQR LAIARAIYKD APILILDEAT SALDSESERH VQAALETLMK
GRTTLVIAHR LSTIERASRI LVMEAGRIVE SGSHRELLAQ DGLYAHLHRI QFQQTAA
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