| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1253 |
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| Symbol | dnaE |
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| ID | 6281929 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 1405004 |
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| End bp | 1408582 |
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| Gene Length | 3579 bp |
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| Protein Length | 1192 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642620812 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_001894892 |
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| Protein GI | 187923250 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0193006 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCCCA TGTCAGATCC CCGCTTCGTC CATCTCCGCG TTCACTCCGA ATTCTCGATT
GCCGACGGCA TCGTGCGTCT TGACGACATC GTCAAGGCCG CGGCCAAAGA CGGTCAGGGC
GCGCTCGCCC TCACCGATCT CGGCAACGCG TTCGGCCTCG TCCGTTTCTA CAAGGAAGCC
CGTGGCAAAG GGGTCAAACC CATTGCCGGC TGCGACGTCT GGATCACCAA TCCGGACGAT
CGCGACAAGC CTTCCCGTTT GCTGCTGCTC GTCAAAGACC GGCGCGGCTA TCTGAACCTG
TGCGAACTGC TCAGCAAGGC ATCGCTCACC AATCAGTACC GCGGTCGTGC AGAGGTCGAA
GCAGGCTGGC TCGAATCCGG TCTCGGCGAA GGCTTGCTCG CACTATCAGG CGCGCAGCAG
GGCGACGTCG GCCTCGCGCT TGCGGCGGGT AATGAGGAAG CGGCCAAACG CAACGCGTTG
CACTGGGCGA AGGTGTTCCC GGGCGGCTTC TATATCGAGT TGCAGCGCAG CGGCCAGCCG
GGCGGCGAGC AGTACGTGCA GCAGGCGGTC GCGCTCGCGG CGTCGCTGAA ATTGCCGGTG
GTCGCCACGC ATCCCATGCA GTTCATGACG CCGGACGACT TCACCGCGCA CGAAGCGCGC
GTGTGCATTT CCGAAGGCGA CATTCTGGCC AATCCGCGCC GCTCGAAGCG CTTTACGTCA
GAGCAGTACT TCCGCACGCA GGAAGAGATG GCGGCGCTAT TCGCGGACAT TCCGTCGGCG
CTCGCCAACT CGGTCGAAAT CGCCAAGCGT TGCAACCTCA CGCTCGAACT CGGCAAGCCC
AAGCTGCCGC TGTTCCCCAC GCCCGACGGC ATGTCGCTCG ACGACTACCT CGTGCAGCTA
TCGAAAGAGG GCCTCGAAAA GCGTCTCGAG CAGTTATATC CGGACGCGGC CGAGCGCGAA
GCGCAACGCG AAACGTATTA CGCGCGCCTC GAATTCGAGT GCGGCACGAT CATCAAGATG
GGCTTTCCCG GCTACTTCCT GATCGTGGCG GACTTCATCA ACTGGGCGAA GAACAACGGC
GTACCGGTCG GGCCGGGTCG GGGCTCGGGC GCGGGTTCGC TGGTCGCGTA CGCGCTCGGC
GTGACCGACC TCGACCCGCT GCGCTACAAC CTGCTGTTCG AACGTTTCCT GAATCCGGAG
CGGGTGTCCA TGCCCGACTT CGACATCGAC TTCTGCCAGC ACGGCCGCGA TCGCGTGATC
CAGTACGTGA AGGAAAAGTA CGGTGCGGAC GCCGTGTCGC AGATCGCCAC CTTCGGCACG
ATGGCGGCGA AGGCGGCGGT GCGCGACATC GGCCGGGTGC TCGACCTCGG CTACATGTTC
ACGGACGGCA TCGCCAAGCT GATTCCGTTC AAACCGGGCA AGCACGTCAC CATCGCCGAC
GCGATGAAAG AAGAGCCGCT CCTGCAGGAG CGCTTCGACA ATGAAGACGA AGTGCACCAG
CTGCTCGAAC TCGCGCAGCG GGTGGAAGGG CTGACGCGTA ACGTCGGCAT GCACGCGGGC
GGCGTGCTGA TCGCGCCAGG CAAGCTGACG GATTTTTGCC CGCTGTATAC GCAGGGCGAT
GAAAGCGGCG TTGTGAGCCA GTACGACAAG GACGACGTCG AAGCCGTCGG CCTCGTAAAG
TTCGACTTTT TGGGTCTGAC CACACTGACG ATTCTGGATT GGGCCGAGCG CTATATCCGC
CGTCTCGATC CGTCCAAGCA GGACTGGTCG CTCGGGCAGG TGCCGCTCGA CGACCCGGCG
TCGTTCTCGA TCCTGAAGAA AGCGAATACG GTCGCCGTGT TCCAGCTGGA AAGCCGCGGC
ATGCAAGGCA TGCTGAAAGA CGCGCAGCCT GACCGTTTCG AGGACATCAT CGCGCTGGTC
GCGCTGTATC GTCCGGGCCC GATGGACCTG ATCCCGAGCT TCTGCGCGCG TAAGCACGGC
CGCGAAGTGG TCGAGTATCC GGATCCGCGT GTCGAATCTG TTCTGAGAGA GACCTACGGC
ATCATGGTCT ACCAGGAGCA GGTCATGCAG ATGGCGCAGA TCATCGGCGG CTATTCGCTG
GGCGGCGCCG ACTTGTTGCG TCGCGCGATG GGTAAGAAGA AGGCCGAGGA AATGGCCGAG
CATCGCGAGC TGTTCCGCCA GGGCGCCGCG AAGAACGGGC TGACTGCGGA AAAAGCGGAC
GAAATCTTCG ACTTGATGGA GAAGTTCGCG GGCTACGGCT TCAACAAGTC GCACGCGGCG
GCGTATGCGC TGCTCGCGTA CTACACCGCG TGGCTGAAGG CGCATCATCC GGCGGAATTC
ATGGCGGCGA ATATGTCGCT CGCCATGGAC GACACGGACA AGGTCAAAAT CCTGTTCGAA
GACTGCCTCG CGAACAAAAT GGCGGTGCTG CCACCGGACG TCAATCTGTC CGCTTACCGC
TTCGAACCGG TTGCCGAGCC TGACGGCAAG CGTTCGAAAA CGATCCGCTA CGGCCTCGGT
GCCATCAAGG GCAGCGGGCA GAACGCGATC GAGGAGATCC TGCGCGCGCG TGAAGAAGGT
CCGTTCATCG ACATCTTCGA TTTCTGCAAC CGGGTCGATC GCCGCATTGT CAATCGCCGC
ACGGTCGAGG CTTTGATCCG CGCCGGCGCG TTCGACACCT TGCATGCGAA TCGCGCGCAA
CTGATCGCGT CCGTCTCACT CGCCATGGAA GCCGCCGAGC AGGCGAGCGC CAACGCGTTG
CAGGCGGGTC TGTTCGACAT GGGCGACGCA CCCTCGCAAG GTCACGAACT GGTCGACGAA
CCGGAGTGGC CGGAAAAGAA AAAACTGCAG GAAGAGAAGG CCGCGCTCGG TTTCTACCTG
TCGGGCCATC TGTTCGACGC CTACAAGAAC GAAGTGCGCC GCTTCGTGCG TCAGAAGATC
GGCGAACTGA AGGAAGGGCG CGACAAGCTG GTTGCGGGCG TGATCGCATC GCTGCGTACG
CAGATGACCC AGCGCGGCAA GATGCTGATC GCGCTGCTCG ACGACGGCAC CGGCCAATGC
GAAGTCACGG TGTTCAACGA GACGTTCGAA GCGCACAAGC AACTGTTCAA GGAAGACGAA
CTGCTGGTCG TGCAGGGCCA GGCGCGTAAC GACGCGTTCA CGGGCGGCAT CCGCTTCACC
GTCGACACGG TCATGGACCT CGGCCGTGCG CGCTGCCGTT ACGCGGAAGC GGTCAAGGTG
CAGATGAACG GCAATGCGGA CGCGCTGGCG TTGCGTCGCG TGCTCGAAGC GCACAGCGCG
GGCAAGGACG AACCGCAAGC AGTCGCGGCG CCGGCGGCTT CATCGCGAGG TGGAAATGGT
GGAAATGGCG GCGGCCGTAA TGGCGGTGGC TATGGCGGAG GTGGCCAGCG TCAGGCGGTA
CAGATCCCGA ACGGGCTTGC CGTTCAGGTG GTCTATCGCA GCCAGAATGC GGAAGGCGAA
ATGCGTCTGG GCGACGCATG GCGCGTGAAG CCGACCGACG AACTGCTCGC AGCGTTGCGC
GGTGAGTTCG CGGGAAGTTC GATCGAGATA GTCTATTGA
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| Protein sequence | MSPMSDPRFV HLRVHSEFSI ADGIVRLDDI VKAAAKDGQG ALALTDLGNA FGLVRFYKEA
RGKGVKPIAG CDVWITNPDD RDKPSRLLLL VKDRRGYLNL CELLSKASLT NQYRGRAEVE
AGWLESGLGE GLLALSGAQQ GDVGLALAAG NEEAAKRNAL HWAKVFPGGF YIELQRSGQP
GGEQYVQQAV ALAASLKLPV VATHPMQFMT PDDFTAHEAR VCISEGDILA NPRRSKRFTS
EQYFRTQEEM AALFADIPSA LANSVEIAKR CNLTLELGKP KLPLFPTPDG MSLDDYLVQL
SKEGLEKRLE QLYPDAAERE AQRETYYARL EFECGTIIKM GFPGYFLIVA DFINWAKNNG
VPVGPGRGSG AGSLVAYALG VTDLDPLRYN LLFERFLNPE RVSMPDFDID FCQHGRDRVI
QYVKEKYGAD AVSQIATFGT MAAKAAVRDI GRVLDLGYMF TDGIAKLIPF KPGKHVTIAD
AMKEEPLLQE RFDNEDEVHQ LLELAQRVEG LTRNVGMHAG GVLIAPGKLT DFCPLYTQGD
ESGVVSQYDK DDVEAVGLVK FDFLGLTTLT ILDWAERYIR RLDPSKQDWS LGQVPLDDPA
SFSILKKANT VAVFQLESRG MQGMLKDAQP DRFEDIIALV ALYRPGPMDL IPSFCARKHG
REVVEYPDPR VESVLRETYG IMVYQEQVMQ MAQIIGGYSL GGADLLRRAM GKKKAEEMAE
HRELFRQGAA KNGLTAEKAD EIFDLMEKFA GYGFNKSHAA AYALLAYYTA WLKAHHPAEF
MAANMSLAMD DTDKVKILFE DCLANKMAVL PPDVNLSAYR FEPVAEPDGK RSKTIRYGLG
AIKGSGQNAI EEILRAREEG PFIDIFDFCN RVDRRIVNRR TVEALIRAGA FDTLHANRAQ
LIASVSLAME AAEQASANAL QAGLFDMGDA PSQGHELVDE PEWPEKKKLQ EEKAALGFYL
SGHLFDAYKN EVRRFVRQKI GELKEGRDKL VAGVIASLRT QMTQRGKMLI ALLDDGTGQC
EVTVFNETFE AHKQLFKEDE LLVVQGQARN DAFTGGIRFT VDTVMDLGRA RCRYAEAVKV
QMNGNADALA LRRVLEAHSA GKDEPQAVAA PAASSRGGNG GNGGGRNGGG YGGGGQRQAV
QIPNGLAVQV VYRSQNAEGE MRLGDAWRVK PTDELLAALR GEFAGSSIEI VY
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