| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1209 |
|---|
| Symbol | |
|---|
| ID | 6281405 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 1352564 |
|---|
| End bp | 1354918 |
|---|
| Gene Length | 2355 bp |
|---|
| Protein Length | 784 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642620768 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001894848 |
|---|
| Protein GI | 187923206 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAT CCCGCTTCTC CGACCAGCGC GATGCCAAAC CCCGGCGCGA CCCCGCAGTG
TCGCGCCGAC GCGCGTTGCT CGTCATTCCC GCGCTGGGCG TATTGGTCCT GATCCTGCTT
TGGACAGTGA TCTTCGCGCG TCTGTCAGTC GAGAAAGAAG CGACCTATCG CGAGGCCATG
GCCTCTGCTG CAATTCTTTC CGCGGCGCTG GAGCAGCACA CCGTCAAGGC GATTCACCAG
GTCGATCAGA TTACCCGCTT CGTCAAATTC GAGTTCGAGA AAACGCCGAA TCATTTCGAT
CTTGCGAGCA CGGTGGAAAA AGGCGTCGTG CAAAGCGAGA CATTGGTGCA AGTGTCGTTG
ATCGACGAAC ACGGCACGTT GGTCGCCAAC ACGGCCGAAC TCAACCCCAA GCGTATCGAT
CTGTCCGACC GCGAACACTT CAAGGTCCAC GAACACGAGA ACGACGACCA GCTATATATC
AGCAAGCCCG TGCTCGGCCG CGTGTCCGGC CACTGGACCT TGCAGATGAC GCGGCGTCTG
AATCATCCGG ACGGCTCGTT CGCGGGCGTC GTGGTGGTCT CCGAAGATCC CAGCTACTTC
ACCACCGACT TCTACAACAA CGCGGCGATC GGCCGCGAAG GCGTGATCGC GGTGATCTCG
GACAACGGCA CCGTGCTCGC GCGGCGCACC GGCAGCACCG AGACCGCCAA CGGCGTGTTC
TCGGCAAGCG GTTCGTATCC GACTTCGGAG CACGTGTCGG GCACCTATAT CGATTCGATC
GACAACGTCA CGCGCATCGT GTCGTACCGG CATATCGACG GCTATCCGCT CGGCGTGCTC
GTGGGTCTCT CGCAAGCCGA AGAATTCGCC GACTACAACC ACACGCGCAA CGTCTATCTG
ATGATGGCGG GTTTCATCTC GCTCGCCATG CTGAGTTTCT TCGCCGTGGC GACCGGCCTG
ATCGGCAAGC TGCTCGGCCG CGAGCGCGAG ATGACGCACC TGGTCGAATA CGATCTGCTC
ACCGGTCTGC GTAATCGCTA CGCGACGCTG CAGACCTTGC GGCACGACGT GGCGCAGCAG
AACAACCTCG GCCGCCTCGC GATTCTCTTT ATCGACCTCG ACAACTTCAA GACCGTCAAC
GACACGCTCG GCCACAATGC CGGCGACATC GTGCTGCAAA TGACGGCCTC GCGGCTCGCC
GCCGCGGTCG GCGAAGGCGG CGCGCTGAGC CGCATCGGCG GCGACGAGTT CGTCGTCGTG
ATCAAGGGCG ACGATGTCGA GAAGCGCGCC GTCGCGCTCG CCGAAGCCGC GGCCGAAGCG
TTCGCCAAGC CGTTCGAAGT GCGCGGCAGT TCGTTCGTGC TGCATGCGAG CATCGGCATC
GCGCTCTACT CGGTCGCCAA CGAAAGCGAG ATCGACCTGC TGAAAAAAGC CGACCTCGCC
ATGTACAGCG CGAAAGACGC GGGCAAGAAC TGCTACCAGT TCTACTCGCC GCAGCTGTCG
CATCGCGCGG ATCATTTGAT GAAGTGGGAA CAGCAGTTGC GCGTGGCGCT CGCCGAAGGC
CAACTGTTCC TCACCTATCA GCCGAAGATC GATCTGACGC GCCGCTGCAT TACCGGCTTC
GAGGCATTGG TACGCTGGAA TCATCCGCAG CACGGTTTGA TTCCGGCGAA CGAGTTCATT
CCGGTTGCGG AATCGACCGG CTTGATCGTG CCGATCGGCG ACTTCGTGAT CGAGACCGCC
TGCCGTCAAC TCGCGCTGTG GCAGCAACAG GGCTACGACA CGCTGTCGCT CGCGGTGAAC
ATCTCGGCGG TGCAATTCTG GCGTGGCGAC CTGTACGAAA CGATCTCGCA CGCCATCGAG
GAAAGCGGCA TCTCCGCGCG CCGCCTCGAA CTCGAAATCA CCGAAACGGC GATGATGGAA
TATCCCGAAC TGGTCTCGGA AAAGATCTTC GCGTTGAAGC GCCTCGGCGT GCGCATCGCG
CTTGACGATT TCGGTACCGG CTATTCGTCG CTGTCCTATC TGAACCGCTT CTCGGTGGAC
ACGTTGAAGG TGGACCGTTC GTTCATCCAG GCAATTCCGG GCGACCGCAG CGTCTGCGTG
ATGGTCACCG CGATCGTCAA TCTGGCGCGC TCGCTCGGGC TCACGGTGGT GGTCGAAGGC
ACGGAGACCG AAGAGCAGAT TGCATGGCTC GCCGCGCTCG GCCATATCGA GGCGCAGGGC
TTTCTATTCT CGCGTCCCGT GCCGGTGGAG GCGATTCCGG CGCTGCTGGA ACGCTTCGGC
GTGTGCGGCA TGACGGGCCG CCGCATCGCG CACGAAGCGG ACAGCACCAG CAGCGTATCC
AGCACCAACC CCTGA
|
|---|
| Protein sequence | MSQSRFSDQR DAKPRRDPAV SRRRALLVIP ALGVLVLILL WTVIFARLSV EKEATYREAM
ASAAILSAAL EQHTVKAIHQ VDQITRFVKF EFEKTPNHFD LASTVEKGVV QSETLVQVSL
IDEHGTLVAN TAELNPKRID LSDREHFKVH EHENDDQLYI SKPVLGRVSG HWTLQMTRRL
NHPDGSFAGV VVVSEDPSYF TTDFYNNAAI GREGVIAVIS DNGTVLARRT GSTETANGVF
SASGSYPTSE HVSGTYIDSI DNVTRIVSYR HIDGYPLGVL VGLSQAEEFA DYNHTRNVYL
MMAGFISLAM LSFFAVATGL IGKLLGRERE MTHLVEYDLL TGLRNRYATL QTLRHDVAQQ
NNLGRLAILF IDLDNFKTVN DTLGHNAGDI VLQMTASRLA AAVGEGGALS RIGGDEFVVV
IKGDDVEKRA VALAEAAAEA FAKPFEVRGS SFVLHASIGI ALYSVANESE IDLLKKADLA
MYSAKDAGKN CYQFYSPQLS HRADHLMKWE QQLRVALAEG QLFLTYQPKI DLTRRCITGF
EALVRWNHPQ HGLIPANEFI PVAESTGLIV PIGDFVIETA CRQLALWQQQ GYDTLSLAVN
ISAVQFWRGD LYETISHAIE ESGISARRLE LEITETAMME YPELVSEKIF ALKRLGVRIA
LDDFGTGYSS LSYLNRFSVD TLKVDRSFIQ AIPGDRSVCV MVTAIVNLAR SLGLTVVVEG
TETEEQIAWL AALGHIEAQG FLFSRPVPVE AIPALLERFG VCGMTGRRIA HEADSTSSVS
STNP
|
|---|
| |