| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1170 |
|---|
| Symbol | |
|---|
| ID | 6281911 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 1309263 |
|---|
| End bp | 1311317 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642620730 |
|---|
| Product | terminase GpA |
|---|
| Protein accession | YP_001894810 |
|---|
| Protein GI | 187923168 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5525] Bacteriophage tail assembly protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGCGA CCGAAGCATT TCTGAAGACG ATCACGGAGG CGATACGGCC TGACAGACGG
ATCGGCATTG CCGAGTGGTC GGAGAAGCAT CGCGTCCTGC CGGAGAGCAG CCCTGAACCC
GGTAAATGGA GAAATGAGCG CACGCCGTAC CTCGTCGGCA TCATGGATGC GCTCTCGGGT
CAGGCGAGCA CCGTAACGCG CTATGCGCAC GACGATGACC GGCCGTTCGA TAACAGCCGC
GTGATCACGG TTGGCCTGAT GAAGGGCCAC CAGCTCGGCG GCTCGGCGCT GGGCGAAAAC
TTCATTGGCC GCTGCATCAC GACGGCGGCC GGGAACATTC TCGCGGTGTT TGCAACGTAC
GACGACGCCG AGAAGTGGGA GATGGACCGC TTCGAGCCGA TGCGTTCGTC GACGCCGGAT
CTGCGTCGCC GCGTGCGCGA CGCAATGAAG AAGGGCAGCG AGAACACCAA GCTGCGCAAG
AAATTCCCTG GTGGCCTGAT GAACCTCGTC AGTGCGACGA GAGCAGGGCG TCTGAAATCG
ACGACCGTGC GCTACGTACT GCTCGAGGAA ATCGACGAGT ACGTGCTCAA TGTCGACGGG
CAGGGCAACC CGATTGAACT CGCGAGAAAC CGCACAAGTA ACTTTGGTCG CCGCGCGAAG
ATTTTCGCGA ACAGCACGCC GACCATCAAA CGTCGGTCGC AGATCGAGAA GCTCTACGAG
GCCGGCGACC AGCGGCGCTA TTTCGTCCGG TGTCCGGACT GCGGATCGCC GCAGTTCTTC
GACTGGCGCA AGGGTATGCG CCGCTCGCCC GACGATCCGG GTGTCGTCCT GTATTACTGT
CAGACCGGTT GCGGCGCGGG CAACCCTGAA AGCGTCTGGA AAACGCGGGG CTATGAAGGC
GCCTACTGGA TGCCGACGAC TCCCGGTGAC GGCAAGACGG CCAGCTTCCA CCTCAGTGCG
TTGTACGCGC CGCTCGGATG GCGCCCGTGG TCGGATCTGA TGGACGACTG GGAAGCGGCT
CAGACCGACA CCGAGAAAAT GATTGCGTTC GTCAACAACG CACTCGCCGA GTGTTGGGAA
GACAAGAGCG CGGAGATGAA GTGGGAGACG ATCAAGCGTC GCGCCGAGTC GTACAAATTG
CGCACGATCC CTCCTGGCTG TCTGCTGCTG ACCTGTGCGG TCGACACGCA GAACGACCGC
CTCGAAGTCG AGATCTCCGG CTGGGGGCGT GGACTGCGTA ACTGGACGAT CGACCACGTC
GTATTTCGGG GTGACCCGGC GTTGCCCGAC GTATGGAACC AGCTCGACCG GTATCTCGAC
ACACCGATCG TCAACCAGTT CGGCGTATCG ATGCGCATCG AACTGTGCGC CGTCGACTCA
GGCGGTAGCC GCACGCAGGA CGTGTATGAC TATTGCCGGC TGCGGCGCCA TCGTGGTGTG
TTCGCCATCA AGGGTGCGAA GGAGAAACAC AAGCCGATCA TCGGTCGCCC GACCGATCAG
GATGTGACGA TCAAGGGCAA GACCTATCCG AACGGCGTCA AGCTCTGGCC GGTCGGCACC
GACACCGCGA AGAGCCGCAT CTTCGGTGCG CTGCTCGGCG ACGAGGAGCG CGAGGTTGTC
GAGCGGCGCA TGCACTTCTC GGTCGATCTC GACGACGAGT ACTTTGAGCA ACTCACGGCA
GAGGCGTACA ACCCATCGAA AGACCGCTGG GACAAGCTGC GCAAGCGCAA TGAAGCGCTC
GACCTGAAGG TCTACAACTT CGCATGCGCG TATCACCCGC GCTTGCGCCT GAACGCCTAT
CAGGATGCCG ACTGGGCAGC GCTCGAAGCG GTGATCGAGC CGCGTGTGCA GGATCTGTTC
GCGTCTGTTC CGGCTCATGA CGTGCCGGCG CCGGAGCAGG CTGACGCAGA CATTGCTGTG
CTTGAGGTTG CGCTGGACAC GGAGCTCGCG GTGGCGCCGG TCGACACGGC GAGCGAACCG
GCGGCGCCAA CGACTGACGC GGGTGCGACG CAGAACTCAT GGATTCCACG CCGGGACAAC
TGGCTGAGGC GATAG
|
|---|
| Protein sequence | MGATEAFLKT ITEAIRPDRR IGIAEWSEKH RVLPESSPEP GKWRNERTPY LVGIMDALSG
QASTVTRYAH DDDRPFDNSR VITVGLMKGH QLGGSALGEN FIGRCITTAA GNILAVFATY
DDAEKWEMDR FEPMRSSTPD LRRRVRDAMK KGSENTKLRK KFPGGLMNLV SATRAGRLKS
TTVRYVLLEE IDEYVLNVDG QGNPIELARN RTSNFGRRAK IFANSTPTIK RRSQIEKLYE
AGDQRRYFVR CPDCGSPQFF DWRKGMRRSP DDPGVVLYYC QTGCGAGNPE SVWKTRGYEG
AYWMPTTPGD GKTASFHLSA LYAPLGWRPW SDLMDDWEAA QTDTEKMIAF VNNALAECWE
DKSAEMKWET IKRRAESYKL RTIPPGCLLL TCAVDTQNDR LEVEISGWGR GLRNWTIDHV
VFRGDPALPD VWNQLDRYLD TPIVNQFGVS MRIELCAVDS GGSRTQDVYD YCRLRRHRGV
FAIKGAKEKH KPIIGRPTDQ DVTIKGKTYP NGVKLWPVGT DTAKSRIFGA LLGDEEREVV
ERRMHFSVDL DDEYFEQLTA EAYNPSKDRW DKLRKRNEAL DLKVYNFACA YHPRLRLNAY
QDADWAALEA VIEPRVQDLF ASVPAHDVPA PEQADADIAV LEVALDTELA VAPVDTASEP
AAPTTDAGAT QNSWIPRRDN WLRR
|
|---|
| |