| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1107 |
|---|
| Symbol | |
|---|
| ID | 6280981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 1244919 |
|---|
| End bp | 1247021 |
|---|
| Gene Length | 2103 bp |
|---|
| Protein Length | 700 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642620666 |
|---|
| Product | oxidoreductase FAD/NAD(P)-binding domain protein |
|---|
| Protein accession | YP_001894747 |
|---|
| Protein GI | 187923105 |
|---|
| COG category | [C] Energy production and conversion
[R] General function prediction only |
|---|
| COG ID | [COG0633] Ferredoxin
[COG1018] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
[COG3576] Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAGTT CAACTGTTCC TTCTTCGCCC GGCTGGGACC TTGAGCGTTC ACCGTTCCAC
GAAGGCGAGT TGGCAGTGCA GGAGCGCGTC GGGGTACGTG AAAAGATAGA CGCTCAAGGG
CGGCGTGCCG TTCGCCGGTA CCTGACGGCC CAACAGAGGG AATTCTTCCT CATGCTGCCG
TACGTTTTCA TGGCATCCGT CGACTCCTCC GGTCGCCCTT GGGCTTCGTT TCTGGTTGGT
GAGCCAGGCT TCGTCAATCC CACCGGCGAT GTGACGCTTA CGGTTCGCGC TCGCGCTCTA
TACGGTGACC CGCTAAACGA CACGCTCGTG CCTGGCGCGG AGATAGCGTT GCTTGGCGTC
CAGTTTCATA CTCGCCGTCG GAATCGCGTG ATAGGCACCG TTGGGGCGTT GCTGCCCGAT
GGCTTCACAA TCGACGTCCG CCAGACCTTG GGTATCTGCC CGCAGTACAT TCAGGGGCGC
GAGCTCTCGT TCAATCGCGA CCCGCTTTTA CCGGAGCCGC GACCGGTTCA CCGCAATAGC
CGGCTCGACG CCTCGGCCTC GGCCATCATT TCTAAAGCCG ATACTTATTT TGTGGCCAGC
GTCCTTTTGC AAGAAGGGGA CCCGGTTGCC ACGGGCGCCG ATGTGTCGCA CCGCGGCGGA
CGGCCTGGCT TCGTCCGTAT CGATGACGAC CACACGCTGA CAGCACCGGA TTTTGTCGGC
AACTTTATCT TCAATACGAT TGGCAACTGG CAATTCGACA ATCATGCGGG GCTGATGTTC
ATCGACTTTG ATAGCGGCGC CATGCTCTAC ATCGCCGCTC ACGCGGAGGT TCTATGGGAC
GGTCCTGAGT TGCACGCGTT CAACGGCGCA CAGCGCCTGT TCCGTTATCA CATCGACGAA
GTTTGCCGGG TCGAGGCAAG CTTGCCATGC ACTTTCACAG CGCCGGACTA TTCCCCGCTT
CTTGAGCGCA CCGGCCACTG GGATATCGTC GCAAAAACGC TGGAAGCGGA ACGGCTTCGT
ACGGTCTGGC GACCGTTCAA GGTTCTGGAG ACCATTGACG AGAGTGCGAC GATCCGCTCC
TTCATTCTGG AGCCGGCAGA CGGTAGCGGT CTCGTGGGTT ACCAGGCAGG CCAGTATCTG
CCCATCCGCC TGCAACCGCC TGGCTGGGCC GAGCCCACGA TCCGCACTTA CACGCTGTCC
GACGCGTCGA ACGGTAGGAC CTATCGGATT AGCGTAAAAC GAGAAGGCAA GGGCGGCTGC
TCCGATTTTT TGCACGACCA CATTGTTGTT GGCGACACGA TAGAGACGCT CGCCCCGCGC
GGTGCATTTG TGTTCGATGA GGCAGCAGGA AGACCTCTGG CGCTTATTTC CGCGGGAGTT
GGCATTACGC CTTTGATCGC GATGCTCAAT AGCCAACTGG TCAACGACGG GCGCACGCTC
CTCCACAAGC CAATCTACTG CATCCATTCC GCGACTAACA GCAAGCACCG CGCATTCGCA
GCACATCTTG CAAAGAAGGG CGAGCTTCAT GCCAACCTCA CTCTGCATGT CGCGTTCAGC
CGTCCTTCTG AAGATGATGT GCTCGGAAAA ACACATCAGA GTGAAGGATA TATTGACCGG
GCGCTTCTGC GCAGAGTACT TCCTCTTGAC GATTACGAGG TTTATCTTTG CGGCCCACCG
GGCTTCATGC AAAGCGTTTA CGACGCTTTA TTATCGCTAG GCGTGCGGGA TTCGAGAATC
CACCTCGAGA GCTTCGGGCC GGCCTCGGTT TCACGCCGAA TCGAACGGAC AGTGGAAGTG
GACAACAGCG AAGGTGTCGT AGTCACGTTC GCCAAAAGTG GCCGGAACGC AATCTGGAGG
CCGAAAGTTG GCAGTCTGCT CGAGTTGGCT GAGGCGAACG GTCTGAAGCC ACTTTACGCC
TGCCGGTCGG GCAGTTGCGG CACTTGCGTA ACGCGAGTCG TTAAAGGTGA AGTCGACTAC
ACCGAGCCTC CGGCACATGA CGTGGAACCG GGAGAGGCGC TGATTTGTAT TGCACGCCCG
CATCCCGGCC CTCATCTCGA GGATGGAACG CAGAATCGTG AAGGTGTCAC CTTGGATATC
TAA
|
|---|
| Protein sequence | MSSSTVPSSP GWDLERSPFH EGELAVQERV GVREKIDAQG RRAVRRYLTA QQREFFLMLP
YVFMASVDSS GRPWASFLVG EPGFVNPTGD VTLTVRARAL YGDPLNDTLV PGAEIALLGV
QFHTRRRNRV IGTVGALLPD GFTIDVRQTL GICPQYIQGR ELSFNRDPLL PEPRPVHRNS
RLDASASAII SKADTYFVAS VLLQEGDPVA TGADVSHRGG RPGFVRIDDD HTLTAPDFVG
NFIFNTIGNW QFDNHAGLMF IDFDSGAMLY IAAHAEVLWD GPELHAFNGA QRLFRYHIDE
VCRVEASLPC TFTAPDYSPL LERTGHWDIV AKTLEAERLR TVWRPFKVLE TIDESATIRS
FILEPADGSG LVGYQAGQYL PIRLQPPGWA EPTIRTYTLS DASNGRTYRI SVKREGKGGC
SDFLHDHIVV GDTIETLAPR GAFVFDEAAG RPLALISAGV GITPLIAMLN SQLVNDGRTL
LHKPIYCIHS ATNSKHRAFA AHLAKKGELH ANLTLHVAFS RPSEDDVLGK THQSEGYIDR
ALLRRVLPLD DYEVYLCGPP GFMQSVYDAL LSLGVRDSRI HLESFGPASV SRRIERTVEV
DNSEGVVVTF AKSGRNAIWR PKVGSLLELA EANGLKPLYA CRSGSCGTCV TRVVKGEVDY
TEPPAHDVEP GEALICIARP HPGPHLEDGT QNREGVTLDI
|
|---|
| |