| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0953 |
|---|
| Symbol | |
|---|
| ID | 6282437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 1072649 |
|---|
| End bp | 1074298 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642620513 |
|---|
| Product | urea ABC transporter, permease protein UrtB |
|---|
| Protein accession | YP_001894596 |
|---|
| Protein GI | 187922954 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTTT CCATCCTCAC AGACGCACGA ACACTGGCAC GACGGCTCGC GCGGCGCGGC
GTCGTTGGCG CGGCGCTCGT GCTGCTCGCC GGCGCACCGC CGGCCGCCTT CGCACTGACC
CAGGCCGATG TCGCGCCGCT CGCCGCCGAC GACTTCGACG CGAAGTCCGC GGCCATCGAC
AAGCTGATCG CCAATCACGA CAAAGAATCG ATGGCGGTTC TCAAAGCGCT CTCCGAAGAC
AGCGCGCTCG CCACCGACGC AGGCGCCGTG CTGCTTCAAG ACGGCGATAC GGCAAAAGAC
GCGGTGACGG GCAAGACCGT CGCCGCGGGC GATGCGCAAC CGGTCACGCT GAACAATCTG
CTGCGCTCGA AAGTCGCCGG CGCGTTGTCC GGTCTGCAAC TCGATTCGCC GGACAAGGCC
GCGCGTGACG CCGCCATCAC CTCGTTGCTG CAAAACCCGG ACCCGTCGAT CAAACCGCTC
GTCGACGCGG CGCGCGCGAA GGAAACCGAT CCCGCGTTGA AGAAGCGCCT CGACACGCTG
TGGGCGATGA CGGCCCTGCA TGATGCCGAC GCGGCCAAAC GCCTGGAAGC CGTGCAACTG
GTCGCTGACC GCCACGACCT CGACATGAAC GAACTGCTGC GTCCGCTCGT CGCGAAGAAG
CCGGACGGCA CCTTCAACGA GCCCGACGAT CGAGTACGAG CCGCCGCGCA GAGCGGCATC
GACGAACTCG ATGCGATCCA GCGCCGCAGC CAGATTGCCG GCACGCTGTT CGCGGGTTTG
TCGCTCGGCA GCGTGCTGCT GCTCGCCGCG CTGGGCCTCG CCATCACGTA CGGACTGATC
GGCGTGATCA ACATGGCGCA CGGCGAGTTC CTGATGATCG GCGCGTACGC AACCTACGTC
GTGCAGAACC TCTTTCAGCG CTTCGCGCCC GGCGCATTCG ACTGGTATCC GCTGCTCGCC
ATTCCGGCAT CGTTCGTCGC CGCGGGACTG GTGGGCATCG TGCTCGAACG GCTGGTGCTG
AAGCATCTGT ACGGCCGTCC GCTCGAAACG CTGCTGACCA CCTTCGGCAT CAGCCTGATC
CTGATTCAGG CGACGCGCAT GCTGTTCGGC GCGCAGAACG TGCAGGTGGT CAACCCTGCG
TGGATGAGCG GCGGCGTGAC CGTACTGCCG AATCTGATCC TGCCGTACAA CCGGCTGGCG
ATTCTCGCGT TCTCGCTAAT CGTGGTCGGC ATCGCGTGGG CCGTGCTCAC GAAGACGCGT
CTCGGCCTCT TTGTGCGCGC CGTCACGCAG AACCGCCGGA TGGCGGCCTG CGTCGGCGTG
AAGACCGCGC GGGTCGATTC ATATGCGTTC GCGTTCGGCG CGGGCATCGC GGGTCTGGGC
GGCTGTGCGC TTTCGCAGAT CGGCAACGTC GGGCCGGACC TCGGCCAGAG CTACATCATC
GATTCGTTCA TGGCCGTGGT GCTCGGCGGT GTCGGTCAAC TGGCCGGGAC CGTGATCGGC
GGCTTCGGTC TCGGGCTGAT CAGCAAGGCA ATCGAACCGT TCTGGGGCGC GGTGCTCGCG
AAGATCGCGG TGCTCGTGCT GATCGTCCTG TTCATCCAGA AGCGTCCGCA GGGCATGTTC
GCCCTCAAGG GCCGTAGCGC GGAGGCATGA
|
|---|
| Protein sequence | MAFSILTDAR TLARRLARRG VVGAALVLLA GAPPAAFALT QADVAPLAAD DFDAKSAAID
KLIANHDKES MAVLKALSED SALATDAGAV LLQDGDTAKD AVTGKTVAAG DAQPVTLNNL
LRSKVAGALS GLQLDSPDKA ARDAAITSLL QNPDPSIKPL VDAARAKETD PALKKRLDTL
WAMTALHDAD AAKRLEAVQL VADRHDLDMN ELLRPLVAKK PDGTFNEPDD RVRAAAQSGI
DELDAIQRRS QIAGTLFAGL SLGSVLLLAA LGLAITYGLI GVINMAHGEF LMIGAYATYV
VQNLFQRFAP GAFDWYPLLA IPASFVAAGL VGIVLERLVL KHLYGRPLET LLTTFGISLI
LIQATRMLFG AQNVQVVNPA WMSGGVTVLP NLILPYNRLA ILAFSLIVVG IAWAVLTKTR
LGLFVRAVTQ NRRMAACVGV KTARVDSYAF AFGAGIAGLG GCALSQIGNV GPDLGQSYII
DSFMAVVLGG VGQLAGTVIG GFGLGLISKA IEPFWGAVLA KIAVLVLIVL FIQKRPQGMF
ALKGRSAEA
|
|---|
| |