| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0946 |
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| Symbol | |
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| ID | 6284166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 1064498 |
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| End bp | 1066387 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642620506 |
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| Product | type VI secretion protein, VC_A0110 family |
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| Protein accession | YP_001894589 |
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| Protein GI | 187922947 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCCGC GACTGCTCGA TTACTACAAC CAGGAACTGA TGTATGTACG CGAACTGGCT
GGCGAGTTCG CGCAACTGCA TCCGAAGATC GCGCGGCGGC TCGGCATGCA GGCCGGCGAG
ATGACCGATC CGTACGTCGA ACGGCTGATC GAGTCGTTCA GCTTCATGGC GGCGCGTATG
CAGCTCAAGC TCGACGCGGA ATTCCCGCGC TTCACGGGAC GTCTGCTAGA GGTGATCTAC
CCGAACTATG TGGCACCGAC GCCGTCCATG GCGGTCGCGC GCTTCTATCC GAGCCCGAGC
GAAGGCAACC TCGTCGAAGG CTTCCCTGTG CGGCGCGGCA GCATGCTCAC GGGCAAGAAG
TCGCCGGGGG AGAACACTTT GTGCGAATTC CGCACGGGCC AGGACGTCGC GCTCTATCCG
CTCGAGATTA CCCATGCACA ACTGACGGGG ATTCCGCCGG ACATTCCCAT GCTCGACCGC
TATGTGCCGC CCCACACGCA AGTGCGTGGC GCATTGCGGC TGCGATTGCG TTCCACGGGC
GATGCCAAAA TCGCCGAGCT GCGCGGACTC GACCGACTGC CGGTCTATCT CGCCGGAGAT
GAGCAGGTTG CGTCGCATCT GTTCGAACTG CTTCACGCGG CAGGCGTTGC GTCGATCACG
GGCGAGCCTG GGCGTTTCGG CGACGCGGCG CGCCCCTTCT GTGCGGTCAC GCATGGCGCG
GTCGCACACG AGGGGCTTGG CGTCGATCAG GGTTTGCTGC CGCTCACCTG GTCGAAATTC
CATGGGCACA ATCTTCTACA CGAATATTTC GCATGTCCGA GCCGCTTTTA TTTTTTCACG
CTGACCGGAC TGCGCGAAGG GCTCAGCAAG GCGAAAGGCC ATGAAGTCGA GATCGTGGTG
CTGCTCGATC AGTCACCGGA CCGGCTGATC GGCCTTGTCG ACGCCTCGCG TTTCGCGCTG
TTTTGCACAC CCGTGATCAA TCTGTTTCCG CGCAAAGCGC AGCGCATCGA ATTGAATCAG
GCCAGCACGG AATTCCATCT GGTTCCGAAG CGCAGCGCGC CGCTCGACTA CGAAGTCTAT
TCGGTCGAAG CACTCACGGC GCAGGTCGGC AAGAACTCGA CGGAATTCGC CTTCCGGCCG
TTGTATCAAA CGCTGAACAA CGACGAAGGC AACCACGGGC GCTATTTTTC GCTTCGCCGC
GAACGCCGGT TGTTATCTGA CTCGGCCCGC CGCTACGGTA CGCGCACGCC GTACATTGGA
ACTGAAGTGT TCGTGTCGCT GGTCGACCAG CAGGAAGCGC CGTATCACGA GGGAATGCGC
TATCTGTCGA TCGACGCCTG GCTGACCAAT CGCGACTTGC CGAATCTGTT GCCGCGCAAC
GGCGTGGACG ATCTGGACGC CGTTGACTCG GTGCCTGCGA TCAGCGTCGG CTTGATTCGT
GCGCCAAGCG CGCCTCGCGC GCCGTTTGCC GAGCGCGAAA CAGCTTGGCG GCTTATCCGG
CAACTGAACT TCAACTATTT GCCGCTGGAA GATATGGATC ACCGCCCTGG CGGCCAGGGT
GTGCGCGACA TGCTGCGCCT GTTCCTGACC GGCGACGACG TGGGACCGCG GCGTCAGGTG
GAAAGCCTCG TCGGCGTGAA GACGCGGCCG GTCGCGAGGA AGCTGCCCGG TGGCGGCCCG
CTGGTGTTCG GTCGCGGCAT CGAATGTCAG TTGACGGTCG ATGAAACCGG CTTTTCCGGT
TTGAGCCCCT ACCTGTTCGG GGTGATTCTC GAGCACTATC TGGCACGGCA CGTATCTATC
AATTCGTTCA CGCAGACCGA GCTTCATTCA ATGCAGCGCG GCCAGTTGAT GCGCTGGCCC
GTGCGCATGG GCACACGTGG AGTGGCTTGA
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| Protein sequence | MDPRLLDYYN QELMYVRELA GEFAQLHPKI ARRLGMQAGE MTDPYVERLI ESFSFMAARM
QLKLDAEFPR FTGRLLEVIY PNYVAPTPSM AVARFYPSPS EGNLVEGFPV RRGSMLTGKK
SPGENTLCEF RTGQDVALYP LEITHAQLTG IPPDIPMLDR YVPPHTQVRG ALRLRLRSTG
DAKIAELRGL DRLPVYLAGD EQVASHLFEL LHAAGVASIT GEPGRFGDAA RPFCAVTHGA
VAHEGLGVDQ GLLPLTWSKF HGHNLLHEYF ACPSRFYFFT LTGLREGLSK AKGHEVEIVV
LLDQSPDRLI GLVDASRFAL FCTPVINLFP RKAQRIELNQ ASTEFHLVPK RSAPLDYEVY
SVEALTAQVG KNSTEFAFRP LYQTLNNDEG NHGRYFSLRR ERRLLSDSAR RYGTRTPYIG
TEVFVSLVDQ QEAPYHEGMR YLSIDAWLTN RDLPNLLPRN GVDDLDAVDS VPAISVGLIR
APSAPRAPFA ERETAWRLIR QLNFNYLPLE DMDHRPGGQG VRDMLRLFLT GDDVGPRRQV
ESLVGVKTRP VARKLPGGGP LVFGRGIECQ LTVDETGFSG LSPYLFGVIL EHYLARHVSI
NSFTQTELHS MQRGQLMRWP VRMGTRGVA
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