| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0936 |
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| Symbol | |
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| ID | 6284530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 1053731 |
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| End bp | 1055074 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642620496 |
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| Product | type VI secretion protein, VC_A0114 family |
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| Protein accession | YP_001894579 |
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| Protein GI | 187922937 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.601087 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTGGT ATAACAAGGT CACCTGGAGC GAAGGTCTGT TCCTGCGCCC GCAGCTTTTC
CAGCAGCAGG AACGCTACCT CGAACATTTC GCCCATAAGC GCGCGGCGCC GCTTTCGCCC
TTTTTCTTCG GCTTCTCTCA CTACGCAATC GACAATGAGG CGCTCGCGCT CGGCAAAGTG
ATCCTGAAGT CTGCCAGCGG CGTATTCGCC GACGGCACGC CCTTCGATTC GCCGGGGAAC
ACGCCGCCGC CCGCCCCGCT GACGGTACGC GCGGAGCATC TGGACCAGGT CATCCATCTT
GCCGTGTCCA TTCGCGTGCC CAACGCGGAA GAAACGACCT TCGACGAGTC CTCCCATTCG
CTCGCCCGCT ATGCCGTGTT CGACACGGAC TTGCGCGATA CGAACTCGGT CGGACAAGGT
CCGAAAGCCG TTCAACTATC CAACCTGCGG CTGCGACTAG TGCCGCAGAA GGAGATGACC
GACGCGTGGA TCGGTCTACC CTTGACGCGA GTCAAGACGC TTCGTGCGGA CGGCAGCATC
GAACTCGACG ATACCCTGGT CCCGCCGGTG TCGGGCTATG GCGCCAACGC GTTGCTCACG
AGCTGGCTGG CGAAGGTCCA CGACCTCACG CGCCTGCGTG CGGATGCGCT CGCCAAACGG
CTGACCGGGA GCGACGGCCA GGCCGGCACG GTCGCGGAGG TCTCGGACTA TCTGCTGCTG
CAAACGCTCA ATCGCTACGA ACCGCTGTTG CAACACCTAC GCCGGGTTCC GACCACCTCC
CCCGCCGATC TCTACGCGCT GCTGCTCAGC ATGGCTGGAG AACTCTCGAC CTACGTGCGT
CCGCAGACGC GCCGGCCGCT CGAAAGCCAT CCGCCGTATC AGCACATCGA GCCGCATCTG
TGCCTGAAGC CCGTGGTCGA CGACACACAC TGGCTGCTCA ACGCGGTCCT CGTACGCAGC
GCGCAAAGCA TTCCGTTTAC CGACGCGGGA TACGGCATGC GCAACGCAGT GGTCGATCCG
GCGGAAATTC GCAGTTTCAG TTCGCTGGTC CTCGCCGTGT CGGCTCAGAT GCCGCCGGAC
ACGCTGGTCC AGCAATTCGC CATGCAGGCC AAGATGGGAC CGTCCGAACG TCTGCCGGAT
CTGGTGCGCT CGCATCTGCC AGGCATCGCG CTTCAGGCGC TGCCCGTGCC GCCGCGGCAG
ATTCCATTCA ACGCCGGCTA CGTGTACTAC GAACTCTCGC GTACGGGTCC GCTGTGGGAG
ACCGTCGCGC AGCACGGCGG CATTGCGCTG CATGTGGCGG GTGATTTCCC CGCACTCAGG
CTGGAACTGT GGGGCGTGCG CTGA
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| Protein sequence | MSWYNKVTWS EGLFLRPQLF QQQERYLEHF AHKRAAPLSP FFFGFSHYAI DNEALALGKV
ILKSASGVFA DGTPFDSPGN TPPPAPLTVR AEHLDQVIHL AVSIRVPNAE ETTFDESSHS
LARYAVFDTD LRDTNSVGQG PKAVQLSNLR LRLVPQKEMT DAWIGLPLTR VKTLRADGSI
ELDDTLVPPV SGYGANALLT SWLAKVHDLT RLRADALAKR LTGSDGQAGT VAEVSDYLLL
QTLNRYEPLL QHLRRVPTTS PADLYALLLS MAGELSTYVR PQTRRPLESH PPYQHIEPHL
CLKPVVDDTH WLLNAVLVRS AQSIPFTDAG YGMRNAVVDP AEIRSFSSLV LAVSAQMPPD
TLVQQFAMQA KMGPSERLPD LVRSHLPGIA LQALPVPPRQ IPFNAGYVYY ELSRTGPLWE
TVAQHGGIAL HVAGDFPALR LELWGVR
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