| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0864 |
|---|
| Symbol | groEL |
|---|
| ID | 6284451 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 962931 |
|---|
| End bp | 964571 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642620426 |
|---|
| Product | chaperonin GroEL |
|---|
| Protein accession | YP_001894509 |
|---|
| Protein GI | 187922867 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02348] chaperonin GroL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000144467 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0762282 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGCTA AAGACGTCGT ATTCGGTGAT TCCGCCCGTG CCAAGATGGT TGAAGGCGTG
AACATCCTCG CGAACGCTGT GAAGGTCACG CTGGGCCCGA AGGGTCGCAA CGTTGTCCTG
GAACGCAGCT TCGGCGGCCC GACGGTCACG AAAGATGGTG TCTCGGTCGC GAAAGAGATC
GAACTGAAAG ACAAGCTCCA GAACATGGGC GCGCAAATGG TCAAGGAAGT GGCTTCCAAG
ACCAGCGACA ACGCAGGTGA CGGCACCACG ACCGCAACGG TCCTGGCTCA GTCGATCGTC
CGCGAAGGCA TGAAGTACGT TGCATCGGGC ATGAACCCGA TGGACCTGAA GCGCGGTATC
GACAAGGCTG TGACGGCCGC AATCGAAGAA CTGCGCAAGA TCAGCAAGCC GTGCACGACC
AACAAGGAAA TCGCTCAAGT CGGCGCGATT TCGGCAAATA GCGATTCGTC GATCGGCGAC
CGTATCGCTG AAGCAATGGA CAAGGTCGGC AAGGAAGGCG TCATCACGGT TGAAGACGGC
AAGTCGCTGC AAGACGAGCT GGACGTGGTC GAAGGTATGC AATTCGATCG CGGCTACCTG
TCGCCGTACT TCATCAACAA CCCGGACAAG CAAGTTGCCG TGTTGGACAA CCCGTTCGTG
CTGCTGCACG ACAAGAAGGT GTCGAACATC CGTGATCTGC TGCCGGTACT GGAACAGGTC
GCCAAGGCTG GCCGTCCGCT GCTGATCATC GCAGAAGACG TCGAAGGCGA AGCGCTGGCT
ACGCTGGTTG TGAACAACAT CCGCGGCATT CTGAAGACGG TTGCTGTCAA GGCTCCGGGC
TTTGGCGATC GTCGTAAGGC CATGCTGGAA GACATCGCGA TCCTGACCGG CGGTCAAGTC
ATCGCTGAAG AAACCGGCCT GACGCTCGAA AAGGCAACGC TGGCTGAACT GGGTCAAGCG
AAGCGTATCG AAGTGGGCAA GGAAAACACG ACGATCATCG ACGGCGCTGG CGAAGCTGCC
AACATCGAAG CACGTGTGAA GCAGGTTCGC ACGCAAATCG AAGAAGCAAC GTCGGACTAC
GACCGTGAAA AGCTGCAAGA ACGCGTTGCC AAGCTGGCAG GCGGCGTTGC AGTGATCAAG
GTCGGCGCTG CGACCGAAGT CGAAATGAAG GAAAAGAAGG CACGTGTCGA AGACGCACTG
CACGCAACGC GCGCAGCTGT GGAAGAAGGC ATCGTGGCAG GCGGCGGCGT TGCGCTGATC
CGCGCACGTA CGGCAATCGC CGGCCTGAAG GGCGCTAACG CCGATCAGGA CGCAGGTATC
AAGATCGTGC TGCGCGCGAT GGAAGAGCCG CTGCGCCAGA TCGTCACGAA CGGTGGCGAA
GAAGCCAGCG TCGTGGTGGC AGCTGTTGCT GCTGGCCAAG GCAACTACGG CTACAACGCA
GCAACCGGCG AGTATGTCGA CCTGGTCGAC GCCGGTGTTG TCGACCCGAC GAAGGTGACG
CGCACGGCGC TGCAAAACGC AGCTTCGGTC GCAGGTCTCC TGCTGACGAC CGACGCAGCT
GTTTGCGAAC TGCCGAAGGA AGATGCACCG ATGGCTGGCG GCATGCCCGG CGGCATGGGC
GGCATGGGCA TGGACATGTA A
|
|---|
| Protein sequence | MAAKDVVFGD SARAKMVEGV NILANAVKVT LGPKGRNVVL ERSFGGPTVT KDGVSVAKEI
ELKDKLQNMG AQMVKEVASK TSDNAGDGTT TATVLAQSIV REGMKYVASG MNPMDLKRGI
DKAVTAAIEE LRKISKPCTT NKEIAQVGAI SANSDSSIGD RIAEAMDKVG KEGVITVEDG
KSLQDELDVV EGMQFDRGYL SPYFINNPDK QVAVLDNPFV LLHDKKVSNI RDLLPVLEQV
AKAGRPLLII AEDVEGEALA TLVVNNIRGI LKTVAVKAPG FGDRRKAMLE DIAILTGGQV
IAEETGLTLE KATLAELGQA KRIEVGKENT TIIDGAGEAA NIEARVKQVR TQIEEATSDY
DREKLQERVA KLAGGVAVIK VGAATEVEMK EKKARVEDAL HATRAAVEEG IVAGGGVALI
RARTAIAGLK GANADQDAGI KIVLRAMEEP LRQIVTNGGE EASVVVAAVA AGQGNYGYNA
ATGEYVDLVD AGVVDPTKVT RTALQNAASV AGLLLTTDAA VCELPKEDAP MAGGMPGGMG
GMGMDM
|
|---|
| |