Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_0860 |
Symbol | |
ID | 6282910 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 958551 |
End bp | 959798 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642620422 |
Product | extracellular solute-binding protein family 1 |
Protein accession | YP_001894505 |
Protein GI | 187922863 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0321479 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.15183 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAGAA CACTCATGTC GGCTGCAATT GTCGCATCGA CCCTCGCCAC GAGCGCACAG GTGGCAAGTG CTGCCGAGTC ACTTTCTGTA TTGCACTGGT GGACCTCGGG CGGGGAATCG AAGGCGATCA GAGTGCTTAA GGACGACATG GATAAACAGG GTTACGAGTG GAAAGACTTC GCCGTAGCCG GAGGAGCCGG TGCGGCCGCC ATGACGGCGT TGAAGACCCA GGTCATGTCC GGCAACGCAC CGTCGGCTGC GCAGATCAAG GGGCCGTTGA TACAGGACTG GGCTGATCAA GGCGTGCTGG TCGATATCGA CAAGTCCGCG ACCGACTGGA AAGCCCAACT TCCGGCGCAG ATCAACAAGA CGATGATGTC AAAAGGCCAC TACGTGGCCG CGCCGTTTTC GGTGCACCGA ATCAACTGGC TGTGGATCAA CAAGGCCGCC CTCGATAAAG TGGGCGGCAA GCCGCCGACC ACATGGCCCG AGTTCTTCGC GCTCGCCGAC AAGTTCCGGG CTGCGGGCAT TACGCCCGTC GCGCGTGGTG GCCAGCCTTG GCAAGACATG ACCATCTGGG AGACAGTCGT GCTATCTCAG GGCGCGGATT TCTATCGCAA GGCCATGATC GACCTCGATC AGAAAACACT CACTTCGCCG CAGATGTTGC AGGTGTTCCA GACTGCCCGG AAGATTCAGG GTTACTTCGA CAAAGGCTCG ACTGGTCGCG ACTGGAATCT CGCGACAGCG ATGGTCATCA ACGGATCGGG TGGGATGCAA TTCATGGGGG ACTGGGCAAA AGGTGAATTC GCGAATGCGA ACAAGAAAGC CGACGTCGAC TATATTTGCG CGGCTGCGCC TGGTACGTCG AATGCCTTCA CCTACACTGT AGACTCGTTC GTGTTTTTCC AGCAGAACGG CAAAAAAGAA GCGACGCTCG GACAGCTTGC GTTGGCAAAG ACAATCATGT CGCCCGCTTT CCAGGAACAA TTCAGTCTGT ACAAGGGTTC GATTCCGGTC AGGCAGGATG TTTCAATGGA CAAGTTCGAC GCCTGCGCCA AGAAGTCATA CGCAGATGAG CAAACCACTA TTAAATCCAA CACGTTCTTT CCGTCGTTCG CGTTCGGCGA CGTTCAGTCG TCAGCCACCG AAGGCGCGAT TACCGATGTC GTGACCGGCT TCATGAACTC GAATGAAGAC CCGCAAGAGG CAATGCGCAA GGTCGCCGCT GCAGCGAAGG TCAAATAG
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Protein sequence | MKRTLMSAAI VASTLATSAQ VASAAESLSV LHWWTSGGES KAIRVLKDDM DKQGYEWKDF AVAGGAGAAA MTALKTQVMS GNAPSAAQIK GPLIQDWADQ GVLVDIDKSA TDWKAQLPAQ INKTMMSKGH YVAAPFSVHR INWLWINKAA LDKVGGKPPT TWPEFFALAD KFRAAGITPV ARGGQPWQDM TIWETVVLSQ GADFYRKAMI DLDQKTLTSP QMLQVFQTAR KIQGYFDKGS TGRDWNLATA MVINGSGGMQ FMGDWAKGEF ANANKKADVD YICAAAPGTS NAFTYTVDSF VFFQQNGKKE ATLGQLALAK TIMSPAFQEQ FSLYKGSIPV RQDVSMDKFD ACAKKSYADE QTTIKSNTFF PSFAFGDVQS SATEGAITDV VTGFMNSNED PQEAMRKVAA AAKVK
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