Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_0701 |
Symbol | secD |
ID | 6281445 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | + |
Start bp | 770924 |
End bp | 772987 |
Gene Length | 2064 bp |
Protein Length | 687 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642620265 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001894349 |
Protein GI | 187922707 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.599175 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCGTT ACCCCCTCTG GAAATACGCC GTGATGCTGG TGGCTCTGGT CATCGGCCTC GTGTACACGC TGCCCAACCT GTTCGGCGAA GCGCCGGCGG TGCAGGTGTC GAGCGGCAAG GCAACGGTCA AGCTCGACTC GACCACGCTG TCGGCTGTCG AAGCCGCGCT CGCCGCCAAT CAGATCAAGC CGGACGACGT CACGTTCGAC AACTCGGCGA CCAACGCGAA CATCCGCGTG CGTCTGCCGG ACACCGACAC GCAGTTGCGC GTGAAGGACC TGCTGCAGAA GTCGCTGAAC AGCGACCCGA CCGATCCGCA GTACATCGTC GCGCTGAATC TGCAAAGCGC GTCGCCGCGC TGGCTGACCG CCTTGCACGC GCTGCCGATG TACCTCGGCC TCGATCTGCG CGGCGGCGTC CACTTCCTGC TGCAGGTCGA CATGGCCGGC GCGCTGAACA AGAAGCTCGA CTCGGACGCT TCGGACGCGC GCACGCTGCT GCGTGACAAG AACATTCGCG ACGGCGGCGT GAACCGCGTC AACCAGTCGG TGGTGATCAA TTTCGCCGAC CAGGCCACGG CGGACAACGC GTCGAAGCAG TTGAGCCGCA GCATCGCCGA ACTCCAGTGG GCCTCGCAAG CCGGTCCCGA CGGTGGCGTG CAACTGGTCG GCACGTTTAC GCCGGCGGTG CAGAAAGCCG TGCAGGACGC TGCGCTCAAG CAGAACATCA CCACGCTCCA TAACCGCGTG AACGAACTCG GCGTGGCGGA GCCGGTGATC CAGCAGCAAG GCGCCGACCG CATCGTGGTC GAACTGCCGG GCGTGCAGGA CACGGCGAAG GCGAAGGACA TCATCGGCCG CACGGCGACG CTCGAAGCGC GCCTTGCCGA TCCGGTCAAC ACGCACCCGA ATCCGTCCGA TCCGGTGCCG CCGGGCGACG AACTGTTCAC GCAAGGCAAC CAGACGCCGG TGCTGCTGCG CAAGCAGATC ATCTTCACGG GCGACCGGAT CATCGACGCG TCGGCGGGCT TCGACGAACA TCAGCGTCCT TCCGTCAACA TCCGTCTGGA TTCGGCCGGC GGCCGCGCGG TGGCCAGCAT CTCGCGCGAC AACATCGGCA AGCCGATGGC CATGGTGCTG TTCGAAAAGG GCAAGGGCGA AGTGCTGACG GTGGCAACGA TCCAGTCGGA ACTGGGCGAC CGCTTCCAGA TCACCGGCCA GGCTACGCCG CAAGGCGCCG CCGACCTCGC GCTGCTGCTG CGCGCCGGTT CGCTGGCCGC GCCGATGGAC ATCATCGAAG AACGCACGAT CGGCCCGAGC CTCGGCGCGG ACAACATCAA GAAGGGCTTC CACTCGGTGG TGTGGGGCTT CGCGGCGATC GCCGTCTTCA TGATCGCGTA CTACATGCTG TTCGGCGTGA TCTCCATGAT CGGCCTGTCG GTCAACCTGC TGCTGCTGAT CGCCGTGCTG TCCATGCTGC AGGCCACGCT CACCCTGCCG GGTATCGCCG CTATCGCGCT CGCGCTCGGT ATGGCGATCG ACGCCAACGT GCTGATCAAC GAACGCGTGC GTGAAGAACT GCGCAACGGC GCGCCGCCGC AACTGGCCAT CCAGAACGGC TACGCGCATG CCTGGGCGAC GATTCTCGAC TCGAACGTCA CCACGCTGAT CGCCGGTATC GCGCTGCTCG CGTTCGGCTC CGGCCCGGTG CGCGGTTTTG CGATCGTGCA CTGTATCGGC ATTCTGACGT CGATGTTCTC GGCCGTGTTC TTCTCGCGCG GCATCGTCAA CCTCTGGTAC GGCGGCAAGA AGAAGCTGAA GTCGCTGGCC ATCGGTCAGG TGTGGCGTCC GGAGACGGCG CCGGCGGGCG CGGCTGCTTA CCTCGGCAGC GAAGATGCCG CGACCGACAC GGCACAAGCC GTCGCCGCGG TCGCTGCCAA GCCGTCGAAA GCGAGAGCTG CGGTCGCGCA GGCACGCGCC GGCAAGCCGA CCGTGCGTCG CCGCAATGCG CCGGATTCGT CCGCTACGTC GAACACGCCG CAGAAACCGG GTTCATCCCG CTGA
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Protein sequence | MNRYPLWKYA VMLVALVIGL VYTLPNLFGE APAVQVSSGK ATVKLDSTTL SAVEAALAAN QIKPDDVTFD NSATNANIRV RLPDTDTQLR VKDLLQKSLN SDPTDPQYIV ALNLQSASPR WLTALHALPM YLGLDLRGGV HFLLQVDMAG ALNKKLDSDA SDARTLLRDK NIRDGGVNRV NQSVVINFAD QATADNASKQ LSRSIAELQW ASQAGPDGGV QLVGTFTPAV QKAVQDAALK QNITTLHNRV NELGVAEPVI QQQGADRIVV ELPGVQDTAK AKDIIGRTAT LEARLADPVN THPNPSDPVP PGDELFTQGN QTPVLLRKQI IFTGDRIIDA SAGFDEHQRP SVNIRLDSAG GRAVASISRD NIGKPMAMVL FEKGKGEVLT VATIQSELGD RFQITGQATP QGAADLALLL RAGSLAAPMD IIEERTIGPS LGADNIKKGF HSVVWGFAAI AVFMIAYYML FGVISMIGLS VNLLLLIAVL SMLQATLTLP GIAAIALALG MAIDANVLIN ERVREELRNG APPQLAIQNG YAHAWATILD SNVTTLIAGI ALLAFGSGPV RGFAIVHCIG ILTSMFSAVF FSRGIVNLWY GGKKKLKSLA IGQVWRPETA PAGAAAYLGS EDAATDTAQA VAAVAAKPSK ARAAVAQARA GKPTVRRRNA PDSSATSNTP QKPGSSR
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