Gene Bphyt_0701 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_0701 
SymbolsecD 
ID6281445 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp770924 
End bp772987 
Gene Length2064 bp 
Protein Length687 aa 
Translation table11 
GC content66% 
IMG OID642620265 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001894349 
Protein GI187922707 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.599175 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATCGTT ACCCCCTCTG GAAATACGCC GTGATGCTGG TGGCTCTGGT CATCGGCCTC 
GTGTACACGC TGCCCAACCT GTTCGGCGAA GCGCCGGCGG TGCAGGTGTC GAGCGGCAAG
GCAACGGTCA AGCTCGACTC GACCACGCTG TCGGCTGTCG AAGCCGCGCT CGCCGCCAAT
CAGATCAAGC CGGACGACGT CACGTTCGAC AACTCGGCGA CCAACGCGAA CATCCGCGTG
CGTCTGCCGG ACACCGACAC GCAGTTGCGC GTGAAGGACC TGCTGCAGAA GTCGCTGAAC
AGCGACCCGA CCGATCCGCA GTACATCGTC GCGCTGAATC TGCAAAGCGC GTCGCCGCGC
TGGCTGACCG CCTTGCACGC GCTGCCGATG TACCTCGGCC TCGATCTGCG CGGCGGCGTC
CACTTCCTGC TGCAGGTCGA CATGGCCGGC GCGCTGAACA AGAAGCTCGA CTCGGACGCT
TCGGACGCGC GCACGCTGCT GCGTGACAAG AACATTCGCG ACGGCGGCGT GAACCGCGTC
AACCAGTCGG TGGTGATCAA TTTCGCCGAC CAGGCCACGG CGGACAACGC GTCGAAGCAG
TTGAGCCGCA GCATCGCCGA ACTCCAGTGG GCCTCGCAAG CCGGTCCCGA CGGTGGCGTG
CAACTGGTCG GCACGTTTAC GCCGGCGGTG CAGAAAGCCG TGCAGGACGC TGCGCTCAAG
CAGAACATCA CCACGCTCCA TAACCGCGTG AACGAACTCG GCGTGGCGGA GCCGGTGATC
CAGCAGCAAG GCGCCGACCG CATCGTGGTC GAACTGCCGG GCGTGCAGGA CACGGCGAAG
GCGAAGGACA TCATCGGCCG CACGGCGACG CTCGAAGCGC GCCTTGCCGA TCCGGTCAAC
ACGCACCCGA ATCCGTCCGA TCCGGTGCCG CCGGGCGACG AACTGTTCAC GCAAGGCAAC
CAGACGCCGG TGCTGCTGCG CAAGCAGATC ATCTTCACGG GCGACCGGAT CATCGACGCG
TCGGCGGGCT TCGACGAACA TCAGCGTCCT TCCGTCAACA TCCGTCTGGA TTCGGCCGGC
GGCCGCGCGG TGGCCAGCAT CTCGCGCGAC AACATCGGCA AGCCGATGGC CATGGTGCTG
TTCGAAAAGG GCAAGGGCGA AGTGCTGACG GTGGCAACGA TCCAGTCGGA ACTGGGCGAC
CGCTTCCAGA TCACCGGCCA GGCTACGCCG CAAGGCGCCG CCGACCTCGC GCTGCTGCTG
CGCGCCGGTT CGCTGGCCGC GCCGATGGAC ATCATCGAAG AACGCACGAT CGGCCCGAGC
CTCGGCGCGG ACAACATCAA GAAGGGCTTC CACTCGGTGG TGTGGGGCTT CGCGGCGATC
GCCGTCTTCA TGATCGCGTA CTACATGCTG TTCGGCGTGA TCTCCATGAT CGGCCTGTCG
GTCAACCTGC TGCTGCTGAT CGCCGTGCTG TCCATGCTGC AGGCCACGCT CACCCTGCCG
GGTATCGCCG CTATCGCGCT CGCGCTCGGT ATGGCGATCG ACGCCAACGT GCTGATCAAC
GAACGCGTGC GTGAAGAACT GCGCAACGGC GCGCCGCCGC AACTGGCCAT CCAGAACGGC
TACGCGCATG CCTGGGCGAC GATTCTCGAC TCGAACGTCA CCACGCTGAT CGCCGGTATC
GCGCTGCTCG CGTTCGGCTC CGGCCCGGTG CGCGGTTTTG CGATCGTGCA CTGTATCGGC
ATTCTGACGT CGATGTTCTC GGCCGTGTTC TTCTCGCGCG GCATCGTCAA CCTCTGGTAC
GGCGGCAAGA AGAAGCTGAA GTCGCTGGCC ATCGGTCAGG TGTGGCGTCC GGAGACGGCG
CCGGCGGGCG CGGCTGCTTA CCTCGGCAGC GAAGATGCCG CGACCGACAC GGCACAAGCC
GTCGCCGCGG TCGCTGCCAA GCCGTCGAAA GCGAGAGCTG CGGTCGCGCA GGCACGCGCC
GGCAAGCCGA CCGTGCGTCG CCGCAATGCG CCGGATTCGT CCGCTACGTC GAACACGCCG
CAGAAACCGG GTTCATCCCG CTGA
 
Protein sequence
MNRYPLWKYA VMLVALVIGL VYTLPNLFGE APAVQVSSGK ATVKLDSTTL SAVEAALAAN 
QIKPDDVTFD NSATNANIRV RLPDTDTQLR VKDLLQKSLN SDPTDPQYIV ALNLQSASPR
WLTALHALPM YLGLDLRGGV HFLLQVDMAG ALNKKLDSDA SDARTLLRDK NIRDGGVNRV
NQSVVINFAD QATADNASKQ LSRSIAELQW ASQAGPDGGV QLVGTFTPAV QKAVQDAALK
QNITTLHNRV NELGVAEPVI QQQGADRIVV ELPGVQDTAK AKDIIGRTAT LEARLADPVN
THPNPSDPVP PGDELFTQGN QTPVLLRKQI IFTGDRIIDA SAGFDEHQRP SVNIRLDSAG
GRAVASISRD NIGKPMAMVL FEKGKGEVLT VATIQSELGD RFQITGQATP QGAADLALLL
RAGSLAAPMD IIEERTIGPS LGADNIKKGF HSVVWGFAAI AVFMIAYYML FGVISMIGLS
VNLLLLIAVL SMLQATLTLP GIAAIALALG MAIDANVLIN ERVREELRNG APPQLAIQNG
YAHAWATILD SNVTTLIAGI ALLAFGSGPV RGFAIVHCIG ILTSMFSAVF FSRGIVNLWY
GGKKKLKSLA IGQVWRPETA PAGAAAYLGS EDAATDTAQA VAAVAAKPSK ARAAVAQARA
GKPTVRRRNA PDSSATSNTP QKPGSSR