| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0667 |
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| Symbol | |
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| ID | 6284480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 730026 |
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| End bp | 733136 |
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| Gene Length | 3111 bp |
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| Protein Length | 1036 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642620231 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001894315 |
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| Protein GI | 187922673 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCCTT TTCTATCGAA GCGGCTGCTG ATCAATCTGG CGGTCGTCGC CGCGGCGATC
GGCGCGAACG CGTTCGTCGC CTATACGCAG ATCTGCGGCC AACGCGACGC CGACGCGCGC
ATGCTGCGTT CGACGAGCGT GCGCCAGCAT CTCGACGCTT ACCACACGGC GCTCGACGGC
GGCCTGGCCG CGCTCGGCCG CTTCGAGGCG TCGGGCGAGC CGGCGCCTGC CAGTGCGGCC
GCTGCGATGG CGACGAGGCT CACGGGTCTG GAGCGCGACC TGCGCAATGA ACTGGCCGGC
GAACCCGCTA TGCTCGACGC GCTCGCGAAG CTGAGCGCGG ACAGCCACGC GTTGCAACAC
GACATCGACG ACGCGCTGCT CAGGAGCGAC GCTGCCGGGC CGGACGCCTC GCGCGCGTGG
GCCGCCTCGA CCTACACCTA TCTCGGGCTC GGCCTGGATC GCGTCGAGGC GGGCCTCGCC
TCACTGCGCG GCGCGGAGAA TCGCGCGTTG CAGGCGTCGC TCGCGGCGTC GGCGAGCGAA
TCGCAGCGGG CGATGTTCCT GCTGATCGTG ACCATGCTGG GCGGCAGCGT GCTGCTGATC
TTCACGTTCG GCGCCCGCGA AAACAGCGCG CGCGAAAAGC TGCGCAGCGT GCGCGCGCTC
GGCCGCCACG ACGAACGCTT TCGCGGCCTG TTCGACGAGC ATCCGGTGCC GATGTATATC
TTCGATCGCG AGACGCTGCG CTTTCTCGCC GTCAACGCGG CCGCGATCCA GCAATACGGT
TACACCGAAA GCGAATTCCT CGGCATGACG ATTCGCGCGA TCCGCCCGAA CGGCGAAATC
TCGCGCCTCG AATCGCACAT GCAGCGCAGC GACGCGGGCC AGCACGGCCG CACCATGGCG
GGTATCTGGC ATCACCGGCG CAAGGACGGC TCGACGATCA ACGCCGACAT TTCGTATCAC
GCGCTGAACT TCATGGGCCG CGCCGCATTC TTCGTGCTCG CCGACGATGT CACCGATCAG
ATCAACGCCG AAGCCGAAGC ACAGCGTTCA AACCAGATGC TCGAAGCGGT GATCGACAAC
ATTCCGCAGC GCATTTTCTG GAAAGACATG GAGTCGCGCT ATCTCGGCTG CAACATGGCG
TTTGCGCGCG ATGCCGGGCT CGCATATCCG GAGCAGGTGG TGGGCAAGAG CGACGCCGAC
ATGCCGTGGC GCGACTTCTC GACGCTGCTG AACGACCACG ACAAGGAAGT GGTGAGCACC
GGCGTGCCGA AGATGAACTT CGAAGTCGAT CTGGTGATCG ACGGCGTGCA CCGCACCACC
GTCACGAGCA AGCTGCCGTT CACCGACGGC GACGGCCGCG TGATCGGCGT GCTCGGTTCC
TACACGGACA TTACCGAGCG CAAGCGCGCC GATCTTGCGT TGCGCCTGCA AAGCCGCGCG
CTCGATGCGA GCGTCAACGC GATTCTGATC ACCGCGCCGT CGCCGACTGG CAATCTGATC
GAATACGTGA ACCCGGCGTT CATGCGCATT ACCGGTTACG ACGCCACCGA GGTGATCGGC
CACGATTGCC GCGTTCTGCA ACGCGACGAC CGCGAGCAGG AGGGCGTTGC GCTGATCCGT
CAGGCGCTGG CGGCGAATCG CGAAGTCAGC GCGGTGGTGC GCAACTATCG CAAGGACGGC
GCGCTGTTCT GGAATCAGCT CTTCATCGCG CCGGTGCCGA ATCAGGACGG CGTGATCACG
CATCACATCG GCGTGATCAA CGACGTGACC GATCTGATGC GCTATCAGGA ACAGCTCGAA
TACCAGGCCA ACTACGACAG CCTCACGCGC CTGCCGAACC GCAATCTGCT GCGCGATCGC
CTGCAGCATG CGTTGATCGT GGCGCAACGG CATCACAAGG GCGTCGCGGT CGTGTTCATG
GATCTGGACG GCTTCAAGAA CGTCAACGAC AGCCTCGGCC ACAGCGTCGG CGACCGGCTG
CTCGGCGTGG TCGCCGAGCG CCTCGCGCGC TGCACGCGCA CGAGCGATAC GGTGGCGCGC
CACGGCGGCG ACGAGTTCGT GATCGTGATG ACCGACACCG TCGACGAACA GTCGCTGATC
GCGTGGATGG AGCGCGTGCG CGCGTCGATC TCCGAGCCGG TCTGGCTCGA CGGCACCGAG
CTGTACGTGG GTTGCAGCAT GGGCGCGAGC CTGTTCCCGC AAGACGGCGA AGACGCCGAA
ACCCTGATGA AGAAGGCCGA CCTCGCGATG TACCGCGCGA AGGACATGGG CCGCAACACG
TTCCAGTTCT ATCAGCCGGA GATGAACGCG AGCGCGGGCG CGCGCCTGAA TCTCGAACGG
CGTCTGCGCC GCGCGTTGCG TGACAACGAG TTCCTGCTGC ACTACCAGCC GCAAGTGGAT
ATCGAAAGCG GACAGATCGT CGGCACCGAG GCGCTGGTGC GCTGGCGCGA TCCGGAAGTC
GGACTGGTGC CGCCGTCGTC GTTCATTCCG GTCGCTGAAG AAAGCGGGCT GATCGGGCCG
CTCTCGGAGT GGGTGCTGCG CGAGGCGTGC CGCCAGAACA AGGCCTGGCA GGACGAAGGC
TTGCCGCCGG CGCGCGTGTC GGTGAATCTG TCGGCGCGCG TGTTCCAGCA GCGCGACATC
GCCAAGCTGG TCATGCAGGT GCTGGCCGAG ACCGGTCTCG AGCCGCAATA CCTCGAACTC
GAATTGACCG AAAGCACCAT CATGCGCAAC GCCGAAGAAG CGGTGTCGAT GCTCAACGAA
CTGCACGCGC TCGGCATCGG CCTCGCCATC GACGACTTCG GCACCGGCTA TTCGAGTCTC
AGCTATCTGA AGCGCTTCCC GGTGGATCGG CTGAAGATCG ACCGCTCGTT CGTGTCCGAC
ATCGGCGTGT CCGGCGACGA CGAGACGATC ACCTCGGCGA TCATCGCACT CGCGCATTCG
CTGAAGTTAC AGGTGATCGC CGAAGGCGTG GAGACGTCCG CGCAACTCGA CTTCCTGAAA
GAGCGCGCGT GCGACGAGAT GCAGGGGTTC TACTTCGCGA AACCGTTATC GACGGACGCG
ATCTCCGAGT TGCTGCAAGG TGGCATAGGG CGCGAACTGG CGACGGTTTG A
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| Protein sequence | MTPFLSKRLL INLAVVAAAI GANAFVAYTQ ICGQRDADAR MLRSTSVRQH LDAYHTALDG
GLAALGRFEA SGEPAPASAA AAMATRLTGL ERDLRNELAG EPAMLDALAK LSADSHALQH
DIDDALLRSD AAGPDASRAW AASTYTYLGL GLDRVEAGLA SLRGAENRAL QASLAASASE
SQRAMFLLIV TMLGGSVLLI FTFGARENSA REKLRSVRAL GRHDERFRGL FDEHPVPMYI
FDRETLRFLA VNAAAIQQYG YTESEFLGMT IRAIRPNGEI SRLESHMQRS DAGQHGRTMA
GIWHHRRKDG STINADISYH ALNFMGRAAF FVLADDVTDQ INAEAEAQRS NQMLEAVIDN
IPQRIFWKDM ESRYLGCNMA FARDAGLAYP EQVVGKSDAD MPWRDFSTLL NDHDKEVVST
GVPKMNFEVD LVIDGVHRTT VTSKLPFTDG DGRVIGVLGS YTDITERKRA DLALRLQSRA
LDASVNAILI TAPSPTGNLI EYVNPAFMRI TGYDATEVIG HDCRVLQRDD REQEGVALIR
QALAANREVS AVVRNYRKDG ALFWNQLFIA PVPNQDGVIT HHIGVINDVT DLMRYQEQLE
YQANYDSLTR LPNRNLLRDR LQHALIVAQR HHKGVAVVFM DLDGFKNVND SLGHSVGDRL
LGVVAERLAR CTRTSDTVAR HGGDEFVIVM TDTVDEQSLI AWMERVRASI SEPVWLDGTE
LYVGCSMGAS LFPQDGEDAE TLMKKADLAM YRAKDMGRNT FQFYQPEMNA SAGARLNLER
RLRRALRDNE FLLHYQPQVD IESGQIVGTE ALVRWRDPEV GLVPPSSFIP VAEESGLIGP
LSEWVLREAC RQNKAWQDEG LPPARVSVNL SARVFQQRDI AKLVMQVLAE TGLEPQYLEL
ELTESTIMRN AEEAVSMLNE LHALGIGLAI DDFGTGYSSL SYLKRFPVDR LKIDRSFVSD
IGVSGDDETI TSAIIALAHS LKLQVIAEGV ETSAQLDFLK ERACDEMQGF YFAKPLSTDA
ISELLQGGIG RELATV
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