| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0602 |
|---|
| Symbol | |
|---|
| ID | 6280975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 651875 |
|---|
| End bp | 653878 |
|---|
| Gene Length | 2004 bp |
|---|
| Protein Length | 667 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642620167 |
|---|
| Product | sodium/hydrogen exchanger |
|---|
| Protein accession | YP_001894251 |
|---|
| Protein GI | 187922609 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0475] Kef-type K+ transport systems, membrane components
[COG0569] K+ transport systems, NAD-binding component |
|---|
| TIGRFAM ID | [TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.616152 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0415752 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCCC CCCTCGAAAT GACGCTGTTC CTGCTGCTGG CATCGGTGGC GGGCGTGGTG
GTGTTTCGCT TTCTGAATCT TCCGCCGATG CTCGGCTATC TGACGGTGGG CATCGTCGTC
GGTCCGCATG CGTTCGGTCT GATTCCCGAC TCGGCGGGCG CGCAGAACCT CGCTGAGTTC
GGCGTGGTGT TCCTGATGTT TTCCATCGGA CTGGAGTTCT CGCTCGCCAA GCTGCGCTCC
ATGCGCCGGC TCGTGTTCGG CCTCGGCCTG CTGCAGGTGA TCGGCACGAT CGCCGTGGCA
GTCTCGCTCG GCTTTGTGCT GGAGCGCTGG GTGCACATCA GGTGGCAAGC GAGCGTGGCG
CTGGGCGGCG CGCTCGCCAT GTCGTCGACG GCGATCGTCA GCAAGATGCT GGCGGAGCGA
TTGGAGATCG AGACCGAGCA TGGCCGCAAT ATCTTCGGCG TGCTGCTGTT TCAGGATCTG
GCGGTGGTGC CGCTCCTCAT CATCATCGCG GCGCTGGGCG GCAACTCAGA AGATCTCGTC
AGCTCGCTCG GCGTGGCGGC CATCAAGATC GTCGTGGCGT TGTCGCTGCT ATTGATCGTC
GGCCAGCGTT TCATGACGCG CTGGTTCAAC GTGGTGGCGC GGCGCCGTTC GCAGGAACTG
TTCATTCTCA ATCTGTTGCT GGTGACGCTG GGTTGCGCGT TCATCACGGA CAAGTTCGGT
TTGTCGCTCG CGCTCGGCGC GTTCATCGCC GGCATGCTGA TCGCCGAGAC GCCGTACCGG
CATCAGGTGG AAGAGGACAT CAAGCCGTTT CGCGACGTGC TGCTCGGGCT CTTCTTCATC
ACCACCGGCA TGCTGCTCAA TCCGCGCGTG ATCTGGGAGC ATCCGCTGAT CGTGCTCGGC
TTTCTGGTCG GCCCGATTCT GCTGAAGGCG ATCATGGTCA CCGGCCTCTC GCGCCTGTTC
GGCGCGTCGC CGGGCGTCGC GATGCGCACC GGTATCGGCC TCGCGCAAGC GGGCGAGTTC
GGCTTCGTGC TGCTGAATCT GATTCTCGAC AAACATCTCG TCGACGCCAC TATGCTGCAG
GCGATCCTCG CGGCTATGCT GCTGTCGATG CTGGCCGCGC CGTTCATGAT CCAGAACGCG
GACCGGATCG TGCTGCGGCT GTCGTCGACT GAATGGATGA TGCAATCGTT GCAAATGACG
CGCATCGCCA CGCAGAGCCT CAAACAGAGC GGCCACGTAA TCATTTGCGG CTACGGCCGG
GCCGGGCAGA ATCTGGCGCG CATGCTGGAA CATGAAGGTT TGTCCTACGT CGCGCTCGAC
CTGGATCCCG ATCGTGTCGC GGCGGCTGCG GCTGCGGGTG AATCGGTCGT GTTCGGCGAT
GCCGGGCGGC GCGAATCGCT GCTTGCAGCC GGTATCCATC GTGCGGCGAC GATTGCGATC
ACTTATGCGA ATACGCCGTC GGCATTGCGC GTGCTGCACA ACATCCACGA ACTGGAGCCG
ACGCTGCCGG TGATCGTTCG TACCGTGGAT GACGCCGATC TGGAAAAGCT GCTGGCCGCG
GGCGCGACCG AGGTGATTCC GGAAATCGTC GAAGGCAGTC TGATGCTCGC CTCGCACACA
CTGGTGGTGA TGGGCGTGCC GATGCGGCGC GTGGTGCGTC GCGTGGAAGA GATGCGCGAT
GAACGCTACG CGCTGCTGCG CGGCTATTTC CACGGCGCCG ACGACGTGGA CGACGACGAC
GGCCACGAAC AGGTACGGCT ACAATCTGTG CCGGTCGACG AAAACGCGGA CGCGGTGGGC
CGAACGCTCG CGGATCTCGG GCTGTTCGAG ATCGGCGTGG AAGTGACGGC GATTCGCCGG
CACGGCATTC GCGGCGTCGA GCCGGACCCG TCCACCAAGC TGCGCGCGAG CGACATCGTG
GTGCTGCGCG GTCTGCCCGA ACAGTTGGCG GAGGCCGAGG AGCGGCTCTC GAAGCACCGG
CGCGCGGGCG CCGCCGCGGC CTGA
|
|---|
| Protein sequence | MISPLEMTLF LLLASVAGVV VFRFLNLPPM LGYLTVGIVV GPHAFGLIPD SAGAQNLAEF
GVVFLMFSIG LEFSLAKLRS MRRLVFGLGL LQVIGTIAVA VSLGFVLERW VHIRWQASVA
LGGALAMSST AIVSKMLAER LEIETEHGRN IFGVLLFQDL AVVPLLIIIA ALGGNSEDLV
SSLGVAAIKI VVALSLLLIV GQRFMTRWFN VVARRRSQEL FILNLLLVTL GCAFITDKFG
LSLALGAFIA GMLIAETPYR HQVEEDIKPF RDVLLGLFFI TTGMLLNPRV IWEHPLIVLG
FLVGPILLKA IMVTGLSRLF GASPGVAMRT GIGLAQAGEF GFVLLNLILD KHLVDATMLQ
AILAAMLLSM LAAPFMIQNA DRIVLRLSST EWMMQSLQMT RIATQSLKQS GHVIICGYGR
AGQNLARMLE HEGLSYVALD LDPDRVAAAA AAGESVVFGD AGRRESLLAA GIHRAATIAI
TYANTPSALR VLHNIHELEP TLPVIVRTVD DADLEKLLAA GATEVIPEIV EGSLMLASHT
LVVMGVPMRR VVRRVEEMRD ERYALLRGYF HGADDVDDDD GHEQVRLQSV PVDENADAVG
RTLADLGLFE IGVEVTAIRR HGIRGVEPDP STKLRASDIV VLRGLPEQLA EAEERLSKHR
RAGAAAA
|
|---|
| |