| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0596 |
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| Symbol | |
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| ID | 6281086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 646392 |
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| End bp | 647903 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642620161 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001894245 |
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| Protein GI | 187922603 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0209881 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCCA GCCTCCAACT CCGCCTATCG CAGCATCTTG CGCTGACGCC GCAACTGCAG
CAGTCCATCC GGCTGCTACA GCTGTCTACG CTCGAATTGC AGCAAGAAGT CGCAATGGCG
ATCTCGCAGA ATCCGCTCCT CGAGAACGAG GACGACTGGA TCGCGAGCCC GTTGCGCGTC
GCGGCCGACG GTTCGCTGAT CGCGCAGGCG CCCAACTCTT CCGCGCCGCC CGACCAGATG
GGCGGCAATA CGTCGTCCTC GTCCAGCAGC GAGCGCGCCG AGAACGGCGA GCCGCAGGGC
GTGGACGAAT ACAACGGCCT CGCGGGCGAC GGCAATGGCG ACGCGTCGCA ATGGAATCTC
GACGACTACG GCCGCTCCGG CAACGCCTCG GACGACGACG ACCTGCCGCC GCTGCAAATC
CATGAATCGA GCACCTCGCT GCGCGATCAC CTGATGGCGC AATTGCGCGT CACCCAGGCG
GGCCAGCGCG ACCGTGCGCT GATCACCTTC CTGATCGAAT CGCTCGACGA CGACGGCTAC
CTGGCCGCCA CGCTCGAAGA AGTGCTGGCC GATCTGCCCG AAGAGCTCGA AGTCGACCTC
GACGAAATGA ACGCCGCGCT CGCGCTGCTG CATAGCTTCG ATCCGGCCGG AGTGGGTGCG
CGCTCCGCGT CGGAATGTCT CAAGCTGCAA TTGCTGCGAC TCGATGCCTC GCCTACACGC
ACGCTCGCGC TAGACATCGT CGCCCATCAT CTGGAACTGC TCGCGGCACG CGATTTCACG
CGTCTGCGCA AGCATCTGAA GGCCAACGAC GACGATCTGC GCGACGCGCA CATACTGATC
CGCTCGCTCG AACCGTTCCC CGGCGCCGCC TATGGCAAGG CCGAAGCGGA CTATGTCGTA
CCGGACATCA TGGTGCGCAA AACAGCACAG GGCTGGCAGG CCGAGCTGAA TCCGGAAGTG
GTGCCGAAGC TGCGTATTAA CCATCTCTAC GCGAACATTC TGCGCAATAA CCGGGGCGAT
CCGGGCAGCG GTTCGTTGCG CCAGCAACTG CAGGAAGCGC GCTGGCTGAT CAAAAATATC
CAGCAGCGTT TCGAGACGAT TCTGCGCGTG GCGCAGGCAA TTGTGGAACG TCAGAAGAGC
TTTTTTGTCC ACGGCGAAAT TGCCATGCGC CCCTTGGTTT TGCGGGAAAT TGCTGATACG
CTGGGCCTAC ACGAGTCAAC TGTCTCGCGT GTGACAACCG GTAAATACAT GCTGACCCCA
TTCGGGACGC TTGAATTTAA GTACTTCTTC GGATCACACG TTTCGACTGA CACGGGCGGC
GCGGCGTCTT CAACGGCGAT TCGCGCGCTT ATCAAGCAAC TGATAGGAGC GGAAAACCCG
AAATCTCCTC TTTCGGACAG TCGCATAGCC GAACTGCTGG CAGAACAGGG CTTCGTGGTC
GCACGGCGTA CCGTTGCGAA ATACCGTGAA GCGCTCAAGA TTCCGGCAGT CAACCTGCGC
AAGTCTCTGT AG
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| Protein sequence | MKASLQLRLS QHLALTPQLQ QSIRLLQLST LELQQEVAMA ISQNPLLENE DDWIASPLRV
AADGSLIAQA PNSSAPPDQM GGNTSSSSSS ERAENGEPQG VDEYNGLAGD GNGDASQWNL
DDYGRSGNAS DDDDLPPLQI HESSTSLRDH LMAQLRVTQA GQRDRALITF LIESLDDDGY
LAATLEEVLA DLPEELEVDL DEMNAALALL HSFDPAGVGA RSASECLKLQ LLRLDASPTR
TLALDIVAHH LELLAARDFT RLRKHLKAND DDLRDAHILI RSLEPFPGAA YGKAEADYVV
PDIMVRKTAQ GWQAELNPEV VPKLRINHLY ANILRNNRGD PGSGSLRQQL QEARWLIKNI
QQRFETILRV AQAIVERQKS FFVHGEIAMR PLVLREIADT LGLHESTVSR VTTGKYMLTP
FGTLEFKYFF GSHVSTDTGG AASSTAIRAL IKQLIGAENP KSPLSDSRIA ELLAEQGFVV
ARRTVAKYRE ALKIPAVNLR KSL
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