Gene Bphyt_0589 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_0589 
Symbol 
ID6283611 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp640315 
End bp641145 
Gene Length831 bp 
Protein Length276 aa 
Translation table11 
GC content65% 
IMG OID642620154 
Productformamidopyrimidine-DNA glycosylase 
Protein accessionYP_001894238 
Protein GI187922596 
COG category[L] Replication, recombination and repair 
COG ID[COG0266] Formamidopyrimidine-DNA glycosylase 
TIGRFAM ID[TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.362043 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.000844173 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCCAGAGT TGCCAGAAGT TGAGGTTACC CGACGGGGAA TCGAACCGTA TGTGTCCGGG 
CGCAAGGTTG AGCGCGTGGA TGTGCGTACG CCCGCATTGC GCTGGCCGAT TCCGGCCGAC
CTTGCGAAAA CCTTGCGCGG CCACGTGGTG CGCAAGGTCG AGCGGCGCGG CAAGTATCTG
CTGTTCGAAA TCGACGCGGG CTGGTTCATC GTGCATCTTG GCATGACTGG GACGCTGCGG
GTGCTGCGCC ACGTGCCGCA TCCGCCGGCC GCGGCGAAAC ACGATCACAT CGACTGGATC
TTCGACGAGT TCATTTTGCG CTATCGCGAC CCGCGGCGCT TCGGCGCGGT GCTGTGGCAT
CCGCGCGAAG CCGGCGACGT GCTCGAGCAT CCGCTGCTCG CGAGTCTCGG CGTCGAACCG
TTTTCGCCCG CGTTTTCCGG CGCGCTAATG CACCGGCTCA CGCGCGGGCG CAAAGTCTCG
GTGAAGCAGG CGCTGCTGGC GGGTGAAATC GTGGTGGGCG TGGGCAATAT CTACGCATCG
GAGAGCCTGT TTCGCGCCGG CATCCGGCCG ACCACCGCGG CGGGGCGCGT CTCGCTCGTG
CGTTACGAGC TGTTGGCGGA CGCCGTGCGC GTGACGCTCG CCGCCGCGAT CGAGAAGGGA
GGCAGCACGT TGCGCGACTT CGTCGGCAGC AACGGCGAAA GCGGTTACTT CCAGCTCGAC
TATTTCGTCT ATGATCGCGC GGGACTGCCA TGCCGCGTGT GTGGAACGCC GATCAAACAG
ATCGTGCAAG GGCAGCGTTC AACGTATTTC TGTCCCACCT GCCAGCGCTA A
 
Protein sequence
MPELPEVEVT RRGIEPYVSG RKVERVDVRT PALRWPIPAD LAKTLRGHVV RKVERRGKYL 
LFEIDAGWFI VHLGMTGTLR VLRHVPHPPA AAKHDHIDWI FDEFILRYRD PRRFGAVLWH
PREAGDVLEH PLLASLGVEP FSPAFSGALM HRLTRGRKVS VKQALLAGEI VVGVGNIYAS
ESLFRAGIRP TTAAGRVSLV RYELLADAVR VTLAAAIEKG GSTLRDFVGS NGESGYFQLD
YFVYDRAGLP CRVCGTPIKQ IVQGQRSTYF CPTCQR