| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0588 |
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| Symbol | |
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| ID | 6283610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 638386 |
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| End bp | 640227 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642620153 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001894237 |
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| Protein GI | 187922595 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.498138 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.00128079 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAACTTGT CCTTCGTGAA GCTGTTTTTC AAGCGCCCGG CTAGCGCATT CCGCGTACCG
CACGCCGTGT CCGCTCGCCG GATGCTCGGT GCGGCGGCGC TCGCGGTGTG GGCGCTGGCT
GCCGTGCCCG CCCACGCGCA GGACCCCTCG CCGGACTCGG ACGACACCTC GGTCACCTTG
CCGGACCCGC TCGGCCCGGC CTCGGCGGAA GACCAGAAGT CCCTGCCCGG CGTGCCGCTG
ACGAGCCAGA TCGTATTCCA GGTGCTCGCC GCCGAAGTCG CGCTGCAGCG CGACCAGCCG
GCGCCCGCCT ATCAGACCTA CCTCGCGCTC GCGCGCGACA CGCACGATCC GCGCATGGCG
CAGCGCGCCA CCGAGATCGC GCTGGCCGCG CAGAGCCCCT CGGACGCTTT GGCCGCCGCG
CAATTGTGGC AGCAGTATGC GCCGAACTCG GAACGCGCCG CGCAACTCGA CGCATCGCTG
CTGGTGTTGT CCGGCAAACC AGACGACGCT TCTCCGATCC TCGCGCGCGA ACTCGCGCGT
GTGCCCGCCG ACAATCGCGG CAGCGCAATT CTGGCGCTGC AGTTGCTGCT CTCGCGCGGC
CCGAACCGGA TCGGCGGCCT GCACGTGCTG CAGGATCTGC TCAAGAACGA CATGAACCGG
CCCGAAGCGC AACTGGCCAT TGCACGCCAG CAGCTCGTAT CGGACGACGC GCCGGGCGCG
CGCAAATCGC TCGAACAGGC GCTCGCGCTC AAGCCCGACT ATTTGCCGGC AGCGCTGACG
CTGTCGCAAA TGGGCCCGGA AGAGCGCAAG GAAGGCATCG CTTCGCTCGA AAAGTATGTG
CAGCAGAATC CGAAATCGCA TGACGCGCGT CTCGCGCTCG CGCAGATGTA TCTCGCGAGC
GACCGTCTGG ACGACGCGCA GAAGCAGTTC GAGATCATGC ACAAGAACAA CGCGAACGAG
TTGACGCCGC TCATGGCGCT CGCGCTGATC AAGATCCAGC AAAAGAATTT CAACGAAGCG
CAAGCCTACC TGACCCAGTA CGCGCAGCAA GCCGAAAAAA CGCCGGGCGC GGATCCGGGC
CAGGCGTATA TCTACCTTGC ACAACTGTCT CTCGAACAGA AGAACGAAGC GGCCGCGAGC
GACTGGCTGA ACAAGATCTC GCCGTCGAGC CAGCAGTATG TGCCGGCGCA GATCACGCGC
GCGCAACTGC TCGCCAAGCA GGGCAAGGTC GACGACGCAC GTAAGCTGCT GGCTAACCTG
CCGGCGCCGG ACCCGCGCGA CCAGGCGCTG CTCATGCGCA CTGACGCGGC GATCCTGTTC
GACGCGAAGC GCTACCCGGA GGCGGAAACA CGTCTGCAGC AAGCCACGGC GCAGTTTCCC
GACGACCCCG ATCTGACCTA TGACTACGCA ATGTCCGCTG AAAAAACCGG CCATTACGAC
GTCATGGAAG CGCAGTTGCG CAAGCTGATC CAGACGCAGC CCGACAACCC GCAAGCGTAC
AACGCACTCG GCTACTCGCT GGCCGATCGC AATCAGCGCC TCGCCGAAGC GGACAAGCTG
GTCGAAAAGG CATCCTCGTT GGCGCCGAAC GACGCGTTCA TCATGGACAG CGTCGGCTGG
GTCAAATACC GGATGGGCGA TACCTCGGAC GCCATCAGGC TGCTGCGCAA GGCGTACGAC
ATGCAGCCGA ACGCTGAAAT CGGCGCACAT CTAGGCGAAG TATTGTGGAA AACGGGCAAT
CAGGATCAGG CACGCGCCGC TTTCCGCGAT GCGCGCAAGC TCGAACCGGA CAACGACACG
CTTGTCAAAA CGCTCCAACG TCTTCAGGTG AACGATCTTT GA
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| Protein sequence | MNLSFVKLFF KRPASAFRVP HAVSARRMLG AAALAVWALA AVPAHAQDPS PDSDDTSVTL
PDPLGPASAE DQKSLPGVPL TSQIVFQVLA AEVALQRDQP APAYQTYLAL ARDTHDPRMA
QRATEIALAA QSPSDALAAA QLWQQYAPNS ERAAQLDASL LVLSGKPDDA SPILARELAR
VPADNRGSAI LALQLLLSRG PNRIGGLHVL QDLLKNDMNR PEAQLAIARQ QLVSDDAPGA
RKSLEQALAL KPDYLPAALT LSQMGPEERK EGIASLEKYV QQNPKSHDAR LALAQMYLAS
DRLDDAQKQF EIMHKNNANE LTPLMALALI KIQQKNFNEA QAYLTQYAQQ AEKTPGADPG
QAYIYLAQLS LEQKNEAAAS DWLNKISPSS QQYVPAQITR AQLLAKQGKV DDARKLLANL
PAPDPRDQAL LMRTDAAILF DAKRYPEAET RLQQATAQFP DDPDLTYDYA MSAEKTGHYD
VMEAQLRKLI QTQPDNPQAY NALGYSLADR NQRLAEADKL VEKASSLAPN DAFIMDSVGW
VKYRMGDTSD AIRLLRKAYD MQPNAEIGAH LGEVLWKTGN QDQARAAFRD ARKLEPDNDT
LVKTLQRLQV NDL
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