| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0516 |
|---|
| Symbol | |
|---|
| ID | 6284466 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 566765 |
|---|
| End bp | 567556 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642620080 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001894165 |
|---|
| Protein GI | 187922523 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.037786 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.544332 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGCC AATCGCGCGT GGGTGCGTGG ACTGCGATGA TCGTCGGTTC GCTGTACTTC
CTCATTCCGT TGATCGCGAC GTTCGAGTTC AGCCTGCGTA TGAAGCGCGG GATCTACAGT
TTCGAAGCGT ACAGCGTCGT GCTCGGCGAT CCGCGCTTTC AGGCCTCGTT CGGCTACTCG
ATTCTGATGG CGCTGCTGAC GATCGTGGTC GGCGTGCTGC TGGTGGTGCC GACCGCTTAC
TGGGTGCAAC TGCGTTTGCC GAAGCTGCGG CCGGTGGTCG AATTCATCAC GCTGCTGCCG
CTGGTGGTGC CCGCTATCGT GATCGTGTTC GGTTATCTGC GCATCTATAA CAGCAGTTCG
ATTCTGCCGC TCACCGGCAA CGAGCGCGCC ACCGATCTGC TGCTGGTATT CGGCTACGTG
ACGCTCTCGC TGCCGTACAT GTACCGCGCC GTCGATGCCG GTCTGCGTGC AGTCGATGTG
CGTTCGCTCA CCGAAGCCGC CGAGTGTCTC GGTGCGAACT GGCCGACGAT TCTGTTCAAG
GTGATCTTCC CGAATATCCG CTCGGGCATT CTGTCCGGCG CGTTCCTCAC CTTCGCGGTG
GTGATCGGCG AGTTCACGCT GGCGAGTCTG CTCGACCGTC CGGCGTTCGG TCCGTATCTG
CAGTTGATCG GTGCGAACCG CGCGTACGAG CCGTCGGCGC TCGCGATCAT CGCGTTCGTG
ATCACGTGGG CGTCGATGGG GCTGATTCAG GTATTCGGCT CGGCCCGCGC GATGAGCGGC
CAGAAAGTGT GA
|
|---|
| Protein sequence | MKSQSRVGAW TAMIVGSLYF LIPLIATFEF SLRMKRGIYS FEAYSVVLGD PRFQASFGYS
ILMALLTIVV GVLLVVPTAY WVQLRLPKLR PVVEFITLLP LVVPAIVIVF GYLRIYNSSS
ILPLTGNERA TDLLLVFGYV TLSLPYMYRA VDAGLRAVDV RSLTEAAECL GANWPTILFK
VIFPNIRSGI LSGAFLTFAV VIGEFTLASL LDRPAFGPYL QLIGANRAYE PSALAIIAFV
ITWASMGLIQ VFGSARAMSG QKV
|
|---|
| |