| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0487 |
|---|
| Symbol | |
|---|
| ID | 6282340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 541189 |
|---|
| End bp | 541671 |
|---|
| Gene Length | 483 bp |
|---|
| Protein Length | 160 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642620051 |
|---|
| Product | rfaE bifunctional protein |
|---|
| Protein accession | YP_001894136 |
|---|
| Protein GI | 187922494 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2870] ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase |
|---|
| TIGRFAM ID | [TIGR00125] cytidyltransferase-related domain
[TIGR02199] rfaE bifunctional protein, domain II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0349421 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCCA TTTTCGAACG CAAGATTCTC ACGCGCGATG CACTGGTGAC GCTGCGTCCC
TCGCTGAACG CGCCGGTTGT GTTTACCAAC GGCGTGTTCG ATATCCTGCA TCGCGGACAC
GTGACGTATC TCGCCGATGC CAAGGCTTTG GGCGCTTGCC TGATCGTCGG CGTGAATAGC
GATGCGTCGG TGCGCATGCT CGGCAAGGGC GACGACCGGC CCATCAACAA CGAAGCCGAT
CGCATGGCCT TGCTGGCAGC GCTGGAGAGC GTCGACTACG TGGTGTGCTT CGGCGAGAAA
ACGCCCGTCG AGTTGATTTC GGCGGTGCGG CCGGACGTGC TCGTAAAAGG CGGCGACTAC
GACATGGACG TGTTGCCCGA GTCGGCCATC GTGCGAAGCT GGGGCGGTAA GGCTTTGGCC
ATTCCCTTCG AGCACGACCG CTCGACTACC GCACTACTGA AGAAGGTTCG TACGCAAGGC
TAG
|
|---|
| Protein sequence | MAAIFERKIL TRDALVTLRP SLNAPVVFTN GVFDILHRGH VTYLADAKAL GACLIVGVNS
DASVRMLGKG DDRPINNEAD RMALLAALES VDYVVCFGEK TPVELISAVR PDVLVKGGDY
DMDVLPESAI VRSWGGKALA IPFEHDRSTT ALLKKVRTQG
|
|---|
| |