Gene Bphyt_0483 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_0483 
Symbol 
ID6283711 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp536508 
End bp537743 
Gene Length1236 bp 
Protein Length411 aa 
Translation table11 
GC content64% 
IMG OID642620047 
ProductExtracellular ligand-binding receptor 
Protein accessionYP_001894132 
Protein GI187922490 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.0914571 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCGAA TCGAATTCCT TGAACCCGAA ACCCAGCGCG CTCGCGCGTC CAACCACTCG 
CGCCCGACGC CATCGCGCGG TCGCCTCACG CGTCGTGCCG TTGCGCTATG CGCGGCGTTG
GCGGGTGTAT TGCCCGGTAT CGCGTTGGCG CAGGTGAAAA TCGGCCTGGT ATTGTCGCTC
ACCGGACCGG CCGCGTCGCT CGGCATTCCG GCGCGCGATA CGGTCGCGCT GCTGCCCAAA
CAGATCGGCG GTCAGAGCGT CGAATACATC GTGCTCGACG ACGCATCCGA TACTACGCAG
GCCGTGCAGG ACACCAAGAA ACTGATCTCC GAGAATCACG TCGACGCGAT CATCGGGTCG
TCGATCACGC CGAATTCGCT GGCCATGATC GATGTAGTCG CCGAAGGTCA AACGCCGATG
ATCTCGCTGG CCTCGTCGGC GAAAATCATC GAGCCCGTGG ATGCGAAACG CCACTGGGTC
TTCAAGACGC CACAAACCGA CGCGATGATG GCGTCGGCGA TTGCCGAACA CGCCAGTCTG
CACGGCGTCA AAACCATCGC ATTTATTGGC CAGGCCGACG CGCTCGGCGA GACCTTCTAC
ACCGAGGTCG CGAAGTTCGC GCAGCTGCAT CACATCGAGA TGGTGGCGAG CGAGCGCTTT
AATCGCACCG ATCCGAGCGT GACCGGCCAG GTCCTTAAGA TTCTCGCGAC GCATCCGGAC
GCGGTGGTGG TCGGCGCGGC CGGCACGCCC GCCGCCTTGC CGCCGAAAAC ACTGAGGGAA
CGTGGCTACA AAGGCCTGAT CTATCACAAT CACGGCGTTG GGAATAACGA CTTCCTGCGC
GTCTGCGGCG CCGATTGCAA TGGCACCTTC CTGCCCGCGA GTCCGGTGCT GGTCGCCGCG
CAATTGCCGG CGGATCATCC GGCCAAGCGG CTTGCGCTCG ATTACATCGC GCGCTTCGAA
GCGGTGCGCG GCGCGGGCAG CGTCTCGGCA TTCGGCTCGT ACACGTGGGA CGCGGGCATG
CTGCTCGGTC ATGCCGTACC GATCGCGTTG AAAAGCGGCG CGCCGGGCAC GCCGGAATTT
CGCCGCGCGC TGCGCGATGC GCTCGAAGCA ACACGCGGTC TCGCGGACAC CAACGGCGTC
GTCAACATGA GCGCCACGGA TCACCTCGGG CTCGATCAGC GGGCGCGGGT GATGGTCGAA
ATCAAGAACG CGAAGTGGGT TTATCAGCCG CGTTGA
 
Protein sequence
MPRIEFLEPE TQRARASNHS RPTPSRGRLT RRAVALCAAL AGVLPGIALA QVKIGLVLSL 
TGPAASLGIP ARDTVALLPK QIGGQSVEYI VLDDASDTTQ AVQDTKKLIS ENHVDAIIGS
SITPNSLAMI DVVAEGQTPM ISLASSAKII EPVDAKRHWV FKTPQTDAMM ASAIAEHASL
HGVKTIAFIG QADALGETFY TEVAKFAQLH HIEMVASERF NRTDPSVTGQ VLKILATHPD
AVVVGAAGTP AALPPKTLRE RGYKGLIYHN HGVGNNDFLR VCGADCNGTF LPASPVLVAA
QLPADHPAKR LALDYIARFE AVRGAGSVSA FGSYTWDAGM LLGHAVPIAL KSGAPGTPEF
RRALRDALEA TRGLADTNGV VNMSATDHLG LDQRARVMVE IKNAKWVYQP R