| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0449 |
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| Symbol | |
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| ID | 6283619 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 499197 |
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| End bp | 501719 |
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| Gene Length | 2523 bp |
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| Protein Length | 840 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642620013 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001894098 |
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| Protein GI | 187922456 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.462145 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.972856 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATGGT TCACACAGCC GCGCACGCTG GAAATCACCG GCAAGGCGCT GCCGCAATGG
GCGGGCGAAC CGCTGTTCGT AGTCTCGCGT CTGCGGGGCA GGGAAAAGCT CGGCCACCTG
TATGAGTACG ACATCGAGGT CAGCACGATC GACGCTGCGG CGTTGAGCGC GAACGAAGCG
CAGGCGCTGG TCGATGTGGA TGCGCTGATC GGCAAGGAAA TCACGCTCAA CATTGCCGTC
GAAGGCAACG GCACGTGGGT GCAGGGCGCC AGAGGCGATG CGGGCATGTC CAATATCGGC
GCCGACATTC GCAAGCTGAC GGGCCTGATC GTCTCGGCGC AGTGCGTCGG AGCGGACGAC
CGGCGCGCGT TCTACCGGCT CAAGCTGCGT CCGTGGCTAT GGCTCGCGAC GTTGAACCGC
GATAGCCGGT TCTGGCAGGA ACGCGACGTG ATCGAAATAA CGCGAGACGT CCTGCAGAAA
TATCCGTTCC CGTTCGAGCT GCGCCTCGCG GGTCCTGGCA TGCAGCGCCG TCCGTATCCC
AAGCGCAACT ACCAGCGGCA ATGGTGGGAG TCGGATTTTT GCTATCTGAA TCGAATCTGG
CAGGAATGGG GCATCAGCTT CTTCTTCGAG CGCAGCACGC TGGTGCTGTG CGATTCGCCT
GGCGCCTATA AAAAGCACGG CCCCGCGTAC CAGACGCTGC GCTATCTGGA GCGCGACGGT
CAACGCATCG ACGAGGAACA CGTCCACGAA TTCAGGGTTG CGCGGCAGCT CACCACGGGC
AAAGTGTCGC TCACCGATTA CGACTACACG CAGTCGCTGG GCAATCTTGC CGTTGCTCAG
GAAGACTACG GCGGGCGGGC CTTCGACAAC GCGGAGGAGT ACGCGTGGGG CGACTACTCG
CAGCCGATGG AAGGCCCCAT GGGCACGCGC GGCCTGCACG GCGACGCGCA GTTCGAAGGC
GAGCATCTGG CGCGCGTGAA GGTCGAAGCG CATCGCGCGA AAAGTCTGCG GGCGAAGGGC
AAAGGCAACC TGCGCGGCTT GATGACGGGC TACACATTCA CGCTCGAAGG CTATCCGCTC
ACACCAGGCG ATGGCGAATA TCTGGTCGTC TCGACCATCA CTGAGATCGT CAACAACGAC
ACGGTTACGC AGCGCGGCGC GATCGACCGC CAGTACAGCT GCACGACGAA GTTTGCGGCA
GTGCCGGCCA ACACCTTCTA CCGCACGCCG CAGAAAGCGA AGAAGCCGCG CGCCTATGCG
GAAGCGGCCG TTGTGACCGG CTATGGCGAC GAACCGGTTT ATTGCGACGA GTACGGACGG
GTCAAGGCGC ACTTCATCTG GGACCGGCTC GGCGAGAAAG ATGAGAACGC GAGTTGCTGG
CTGCGCGTGG CGTCACCCTG GCATGGCGTG GAACACGGCG CGATGTGGCT GCCGCGCGTC
GGACACCATG TGCTGGTCGG CTACTACGAC AGCGATCCTG ACCGTCCCTA CATCATTTCG
GAGCATACGA CTGAGTTCCA CCAGGCGCCG TGGCAGTTGC CGAAGAACGA CGCGCTGTCG
GGGTGGCGCA GCCGGGACCT GAAGGGACTG GCTGCCAACA GCGTGGTGAC GGACGACACG
CCGGGCCAGT TGCAGGTGCA GGTGGCCAGC GACCATGCGC AGTCGCGGCT GGTGCTGGGC
TACAACACGC GCATCGACGG GCATAGCGGA CGCGACAAGG CGCGCGGCGA GGGCTTCGAA
CTCGCGACCA ACGCGTGGGG CGTGATGCGG GCCAACAAGG GCATGCTCAT TACCACGCAG
ACGCGCGCGG GCGCTTGCGC CGCCGCCAAG GACAACGATG AGATTGTCGG CCGGCTCGAA
AAGGCGCAGG TGTTGCACGA CGCGTTGGCG CAAGTCGCGG TGCAGGGCGA AGCGCAGGAG
GCGGAGGGCC ACCAGGCGGA CATTGCCAGA ACGATCCAGG CGCAAAACGA ACAGCTTCGC
GGAACGGCTG CGACGGACGC CGCGTTTCCA CAGCTGAGCG AACCGCACCT GCTCATCGAC
GGCAAGGCTG GCGTCGAAAT CGCGTCGCCT GCGACCGTGC ACATCGCGGC CCAGCAGGCT
GCGGTGACCG CTGAAGGACA TGTGGCCATT GCGAGCGGAC GCAGCCTGTT CGGCACTGTG
CGAGACACCA TCCGGCTTTT CGCGCAGCGT GCCGGCATCA GGCTGTCGGC GGCGGCGGGC
GACATCGTTT TGCACGCGTT GACGAGTTCC ATCAGCCTCG ATTCCGCGAA GTCCATCACG
CTTTTGAGCA AGGTCGTTCG GATTACCGGT GTTGAAAAGC TGGAGCTGCA AGGCGGCAAG
AGCAGGTTGG TGCTGGATGA CTCCGGCGCG CAGATATTCA CGCCGGGCAA GTTCGCCGCG
TTTGCCGCGA CGCATTCACT GCCCGGACCG AAGAGCACGC CTGCGGACCT TTCGCCTAAA
GGCGTTTGTA TAGATTGTCT GCTCAAGGCC GCGAGAGGTG GATCGGCTTT TGTGATCCGC
TAG
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| Protein sequence | MSWFTQPRTL EITGKALPQW AGEPLFVVSR LRGREKLGHL YEYDIEVSTI DAAALSANEA
QALVDVDALI GKEITLNIAV EGNGTWVQGA RGDAGMSNIG ADIRKLTGLI VSAQCVGADD
RRAFYRLKLR PWLWLATLNR DSRFWQERDV IEITRDVLQK YPFPFELRLA GPGMQRRPYP
KRNYQRQWWE SDFCYLNRIW QEWGISFFFE RSTLVLCDSP GAYKKHGPAY QTLRYLERDG
QRIDEEHVHE FRVARQLTTG KVSLTDYDYT QSLGNLAVAQ EDYGGRAFDN AEEYAWGDYS
QPMEGPMGTR GLHGDAQFEG EHLARVKVEA HRAKSLRAKG KGNLRGLMTG YTFTLEGYPL
TPGDGEYLVV STITEIVNND TVTQRGAIDR QYSCTTKFAA VPANTFYRTP QKAKKPRAYA
EAAVVTGYGD EPVYCDEYGR VKAHFIWDRL GEKDENASCW LRVASPWHGV EHGAMWLPRV
GHHVLVGYYD SDPDRPYIIS EHTTEFHQAP WQLPKNDALS GWRSRDLKGL AANSVVTDDT
PGQLQVQVAS DHAQSRLVLG YNTRIDGHSG RDKARGEGFE LATNAWGVMR ANKGMLITTQ
TRAGACAAAK DNDEIVGRLE KAQVLHDALA QVAVQGEAQE AEGHQADIAR TIQAQNEQLR
GTAATDAAFP QLSEPHLLID GKAGVEIASP ATVHIAAQQA AVTAEGHVAI ASGRSLFGTV
RDTIRLFAQR AGIRLSAAAG DIVLHALTSS ISLDSAKSIT LLSKVVRITG VEKLELQGGK
SRLVLDDSGA QIFTPGKFAA FAATHSLPGP KSTPADLSPK GVCIDCLLKA ARGGSAFVIR
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