| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0448 |
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| Symbol | |
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| ID | 6283618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 497269 |
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| End bp | 499155 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642620012 |
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| Product | type VI secretion protein, VC_A0110 family |
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| Protein accession | YP_001894097 |
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| Protein GI | 187922455 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCCGC GACTGCTCGA CTACTACAGC CGTGAACTGC TCTACATCCG CGAGTTGGCG
ATGGAGTTTG CCGCCGCGCA TCCAAAGATC GCACGGCGGC TCGGCATGCA CGCCGGCGAG
ATCGGCGACC CTTACGTGGA GCGCCTGCTG CAGTCGTCGG CATTCGTGAC CGCCCGGGCG
CAAATCCGGC TGGACGACGC GTTCCCGGAA TTCACGCTGC CGCTGTTGCA GACCGTCTAT
CCGAACTACA CGTGTCCGAC ACCGTCGATA GCCGTTGCGC GATTCTTCCC GCTTGCACAA
GGTAAGCATG CCGTGAACGG CACGGTCGTG CCGCGCGGCA CCGCATTCCC CTCGCGCATT
CCCGATGGCG AACTCACCGC CTGTGAATTC CGCAGCAGCC AGGACGTCAC GCTGTTTCCC
CTGGAGATCG TGCAGGCGCG GCTGACCGGA ATTCCACCCG ACATTCCCAT GCTCGACCGG
TATGTGCCGG CGGGCCGGAC TGCGCATGGT GCGCTGCGTC TGCGGTTGCG CACGACGAAC
GGCGCGTCGA TTGCGAATCT GGCCGGACTG GACCGGTTGC CGGTCTATCT CTCGGGTGAT
GAAACCACCG CCTCGCATCT GTTCGAACTG ATTCATGCGG CGGGCGTCGT CACCGTGATT
GGCGTCCCCG GCGAGTTCGC GACCGGCACG TTGCACGCGG TCACGCGCGA CGCGGTTGTG
CATGAAGCGC TCGAACCGGA ACAAAGCCTG CTGCCCGCCG TGCCTCGCAA GTTCCACGGT
CACAACCTGT TGCAGGAGTA TTTCGCCTGT CCCGCACGCT TCTGGTTCTT CACGCTCACA
GGGCTGGCCA AGGGACTCGC CTCGATTGCG GGTAACGAGG CCGAAATCGT GCTTCTGCTG
GAGCGCCCCG TGGACAGGCT GGCCGAGACC GTTGACGCGT CGCACTTCGC GCTGTTCTGT
ACACCGGTCA TCAATCTCTT CCCTAGGCGC ACGGACCGGC TCGATCTCGA TCCGGACCGG
CAGTCACACC GGCTTGTGCC CGTACCGGCC GCGTCTTCTG ATTACGCTGT GCATTCCGTG
CAGGCGGCCT GGGGCCAGGT TTCCGAAGAT TCTGAAGCGC TGCGTTTTTA TCCGCTGCAT
GCGTCCGTTG GCGAAAGCAC GAGCCGCGGC GCGCGCTATT TCACGATTCG CCGCGAACCG
AACCGGGCTG AAGAGGACGG TCGCCACTAC GGCACGCGCC GTCCGTTTAC CGAGACGCGC
ACCTTCATTT CGCTGGTTGA CCGGGATGAG CAGCCCAATA CCGAGCGGAT TCACTACCTG
TCGCTCGAGG CGTTGCTGAC CAACCGCGAT CTACCGTGCT TGATTCCGTG CGACGGCAGG
CGTGACCTGT TCCCGCACAA ATCGATACCG GCTGAAAGCG TCGGCCTGGT GCGCGCGCCG
ACCATGCCCC GGCCACCGCT GGCCTCCGGC GAGCGGGCAT GGCAGTTGTA CGGCCAGCTC
AACCTCGGCT ACATGACCTT CGACGAGCCG CCCGACCGGC CGGCGACCGG CGACGCATTG
CGCAGACTGC TGCGTCTGTA TCTGAGCGAG GATGCCGCCG TGCTGCGCCG TCAGGTCGAA
GCGCTAAGGA GCGCGACGGC GACGCCCGTG AACCGCCGCT TGCCGCCGCA CTTCCCGCAG
CCGTTCGGCC GCGGTATCGA ATGCACGCTT ACTTTCGACG AAAGCGGGTT TGACGGCATG
AGTCCGTACA CGCTCGGGCT CGTGCTGGAG CGCTACGTCG CCCGTCATGT GTCGGAGCGC
TCATTCACGA CAACCGTGCT GTGCTCGACG CAGCGCGGAC GCCTCACGCA CTGGCCACCG
CGCGCGGGTA CGCGCGGCGC GGCCTGA
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| Protein sequence | MDPRLLDYYS RELLYIRELA MEFAAAHPKI ARRLGMHAGE IGDPYVERLL QSSAFVTARA
QIRLDDAFPE FTLPLLQTVY PNYTCPTPSI AVARFFPLAQ GKHAVNGTVV PRGTAFPSRI
PDGELTACEF RSSQDVTLFP LEIVQARLTG IPPDIPMLDR YVPAGRTAHG ALRLRLRTTN
GASIANLAGL DRLPVYLSGD ETTASHLFEL IHAAGVVTVI GVPGEFATGT LHAVTRDAVV
HEALEPEQSL LPAVPRKFHG HNLLQEYFAC PARFWFFTLT GLAKGLASIA GNEAEIVLLL
ERPVDRLAET VDASHFALFC TPVINLFPRR TDRLDLDPDR QSHRLVPVPA ASSDYAVHSV
QAAWGQVSED SEALRFYPLH ASVGESTSRG ARYFTIRREP NRAEEDGRHY GTRRPFTETR
TFISLVDRDE QPNTERIHYL SLEALLTNRD LPCLIPCDGR RDLFPHKSIP AESVGLVRAP
TMPRPPLASG ERAWQLYGQL NLGYMTFDEP PDRPATGDAL RRLLRLYLSE DAAVLRRQVE
ALRSATATPV NRRLPPHFPQ PFGRGIECTL TFDESGFDGM SPYTLGLVLE RYVARHVSER
SFTTTVLCST QRGRLTHWPP RAGTRGAA
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