| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0426 |
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| Symbol | |
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| ID | 6282911 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 470506 |
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| End bp | 472356 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642619990 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001894075 |
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| Protein GI | 187922433 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.636145 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACCTC GCTCGCCCTC CCGATCCGCC GCGCCGCGCG TCGAGGAGTT GATCGCCCGG
CGTGAGCTGT CCGCCGTGTT CCAGCCGATC ATCGATTTCG AAAACGGCGC GATCCTCGGC
TATGAAGGTC TGATCCGCGG CCCGGCCGGC ACGCCGCTCG AAGCGCCGTT CGCCTTGTTT
GCGCAAGCGC TCGCCGAGGG CTGCACGATC GAGCTCGAAC GCGCCGCCGC GCGCACCTGC
ATCGAAGCGT TCGCGCGGCT CGACTTCGAC GGCAAGCTGT TTCTGAATTT CAGCGCGGGC
GCGATGCGCC AGCTGGCCGA GGCGCGCGAC GACACGCTCG CGCTGCTGCG TCATCGCGGC
GTCGATCCGC AACGGATCGT GGTCGAGCTG ACCGAGCAAA GCACGATTCT GGACGTGAGC
AGTTTCCTGC CGGTGATCAC GACATTGCGC ACAACCGGCG CGCAATTCGC GCTCGACGAC
TACGGCACCG CGAACGCCAG CATGAGCTTG TGGGTGCGGC TGCAACCGGA CGTCGTGAAG
ATCGACCGCT TCTTCATTCA CGACATTGCC TGCGACCCGC TCAAGTTCGA GGCCGTGCGC
GCGATGCAGC ACTTCGCCAG CGCGAGCGGC GCGCGGCTCG TCGCCGAGGG CATCGAAAAC
GAAGCGGATC TGATCGTGGT GCGCGACATG GGCATCGGCT GCGGGCAGGG CTTTTTCTTC
GGCCGTCCGC ACGCGCAGCC GGCCCGCCAG GTGACCGACG ACGCCCGCGA CGCGCTGCGC
GCCGGCCACA TCGCCGTGTT CCCCGAGACC ACGCGCACGG TGAGCAGCGC GTCGCCTTCG
GGCGGCATGG CATCGGAAAA AATGCTGGTG CATGCGCCCG CGCTGCCGCG CCAGGCGACC
AACAACGACG TGCTTGAACT GTTCAACCGC CTGCCCGACC TGCATGCGGT CGCGGTCGTC
GAACACGACG AGCCGGTCGC GCTGATCAAC CGCCGCAGTT TCATGGACCG CTACGCGCTG
CCGTATCACC GCGAGCTATT CGGCAAGCGT CCTTGCCTGC TTTTCGCCAA TGCATCGCCG
GTGGTGATCG AGAAATCGAT GACCGTCGAG CAGATGGCCA AGCTCCTCGC AAGCGACGAT
CAGCGCTATC TCGCCGATGG CTTCGTCATC ACCGACAACG GCAAATACGT CGGCCTCGGC
ACAGGCGAGA AGCTCGTGCG CGCGGTGACC GAGGTGCGCA TCGAAGCCGC GCGCTACGCA
AATCCGCTGA CCTTCCTGCC GGGCAACATC CCGATCAGTT CGCACATTGC CCGCCTGCTC
GGCAACGACG CCGGCTTCTA CGCGTGCTAC GTCGACCTGA ACCACTTCAA GCCGTTCAAC
GACCAGTACG GCTACTGGCA AGGCGACGAA GTCCTGAAAT TCGCCGCCGT CGTCCTCGCC
GACGTGTGCG ATCCCACCCG CGACTTTCTC GGCCACGTAG GCGGCGACGA CTTCCTGATC
CTGTTCCAGA GTGACGACTG GCGCGAGCGC GTGCTGCGCG CGATCCACGT GTTCAATGAA
GGCGCGCAAC GCTTTTACGC GCCGGCCGAT CGCCTCGCCG GCGGCATTCA CGGTGAGGAC
CGGCGCGGCA ATCCGACCTT CTTCGGTTTC GTGACGATGG CGATCGGCTG CGTGCGCGTC
GAACCCGCCG ACGGCCCGTC GCTCTACAGC AGCGAGGAAA TTGCTTCCGT AGCGGCGCTG
GCCAAGCGCC GCGCGAAGCA CGAAACGAGC GGTTTCGTGC TGATCGACGC CGACGAAAGC
GTCGCCTTGT TGCGTGGACA GGCCGAAGCC ACTCACGTTT CGCTGGAGTG A
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| Protein sequence | MQPRSPSRSA APRVEELIAR RELSAVFQPI IDFENGAILG YEGLIRGPAG TPLEAPFALF
AQALAEGCTI ELERAAARTC IEAFARLDFD GKLFLNFSAG AMRQLAEARD DTLALLRHRG
VDPQRIVVEL TEQSTILDVS SFLPVITTLR TTGAQFALDD YGTANASMSL WVRLQPDVVK
IDRFFIHDIA CDPLKFEAVR AMQHFASASG ARLVAEGIEN EADLIVVRDM GIGCGQGFFF
GRPHAQPARQ VTDDARDALR AGHIAVFPET TRTVSSASPS GGMASEKMLV HAPALPRQAT
NNDVLELFNR LPDLHAVAVV EHDEPVALIN RRSFMDRYAL PYHRELFGKR PCLLFANASP
VVIEKSMTVE QMAKLLASDD QRYLADGFVI TDNGKYVGLG TGEKLVRAVT EVRIEAARYA
NPLTFLPGNI PISSHIARLL GNDAGFYACY VDLNHFKPFN DQYGYWQGDE VLKFAAVVLA
DVCDPTRDFL GHVGGDDFLI LFQSDDWRER VLRAIHVFNE GAQRFYAPAD RLAGGIHGED
RRGNPTFFGF VTMAIGCVRV EPADGPSLYS SEEIASVAAL AKRRAKHETS GFVLIDADES
VALLRGQAEA THVSLE
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