| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0349 |
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| Symbol | dapF |
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| ID | 6281342 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 377915 |
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| End bp | 378814 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642619912 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001893998 |
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| Protein GI | 187922356 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTGA AATTCACCAA AATGCACGGT GCGGGCAACG ACTTCGTCGT GCTCGACGGC
TACACCCAAC CGGTCAACCT GACGCCGGCG CAGGTGCGCG CGCTCGCGGA CCGGCATTTC
GGCGTCGGTG CCGATCAGTT GCTGCTGGTC GAGAAGCCCA CGGTGGCCGG CGTCGATTTC
AGATATCGCA TCTTCAATTG CGACGGCGGC GAAGTCGAGC ATTGCGGCAA CGGCGCGCGC
TGCTTCGTCA AGTTCGTGCG TGACAGTGGC CTCACCGATC AGCGCAGCGT GCGCGTGCAG
GTGCAAAAGG GCACCATCAC GCTGACCATG CAGGAAAACG GCGAAGTGCT GGTCGACATG
GGCACGCCCG TGTTCGACCC GGAACGCGTG CCGTTCGCCA CCAAAGGTCT GCAAGGCCGC
GGCGAGGGCG CGGACACGCT CTGGCCGCTC GACGTGAACG GCACGACGCG CTGGATTTCG
GTGGTGTCGA TGGGCAATCC GCACGCCGTG CAAGTGGTCG ACGACGTCGA GGCGTTCCCG
GTGCTGGTTG AAGGCCCGGT GATCGAACGT CATGCGCGTT TTCCGCAGCG GGTGAACGCG
GGCTTCATGC AGATCGTCGG CCGTAGCGAG ATCAAGCTGC GCGTGTACGA ACGCGGCGCG
GGGGAAACGC TGGCGTGCGG CACGGGCGCG TGTGCGGCGG TTGCGGCCGG CATCCGGCGC
GGGCTGCTGG ACGCACCGGT GCTCGTCCAC ACGCATGGCG GCAAACTGAC CATCACGTGG
GACGCCGCGC AAGCAGACCA GCCGCTGCTC ATGGCCGGCC CTGCCGCGAC GGTTTTCGAA
GGCGAAATCG AACTGCCCGA CTCATTGGCC GACTCGTTGG CCAATTCACA GGCCGCATAA
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| Protein sequence | MKLKFTKMHG AGNDFVVLDG YTQPVNLTPA QVRALADRHF GVGADQLLLV EKPTVAGVDF
RYRIFNCDGG EVEHCGNGAR CFVKFVRDSG LTDQRSVRVQ VQKGTITLTM QENGEVLVDM
GTPVFDPERV PFATKGLQGR GEGADTLWPL DVNGTTRWIS VVSMGNPHAV QVVDDVEAFP
VLVEGPVIER HARFPQRVNA GFMQIVGRSE IKLRVYERGA GETLACGTGA CAAVAAGIRR
GLLDAPVLVH THGGKLTITW DAAQADQPLL MAGPAATVFE GEIELPDSLA DSLANSQAA
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