| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_0185 |
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| Symbol | |
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| ID | 6284127 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 198084 |
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| End bp | 200225 |
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| Gene Length | 2142 bp |
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| Protein Length | 713 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642619755 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001893844 |
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| Protein GI | 187922202 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.00871841 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGTAACAG TGCTGGGATG CATTACTGAG AAGCACAACG TCTGGCTGGT ACTCGTGGCC
GGGTTACTGT GCGCCGTGGG TTCCTGGGTG ACCGCCCGGC TGTTCCAGCG CACGGTGGGC
ACCGCCGGCA TGCAGAAGCT GGGCTGGCAT GTCCTGACGG CGATTTCGGC CGGCGTCGCC
ATCTGGTGCA CCCACTTCGT CGCGATGCTG GGTTTCGACG CGGGCGTGCC AGTCAGTTTC
GATCCTTTTT TGACGGTCCT GTCCCTGCTG ATCGCGGTAG GCGGCAGTAC CTTTGGCTTC
GCGCTCGCCG GCAGCCGGGT GACCCGGTTC GCGCCCGCAC TGGGCGGCGC GATCGTTGGC
GTGGCGATCG CCCTGATGCA CTACACCGGC ATGATGGCCT GGCGGATCGA AGGCATCATT
TCGTGGGACG TGCCGTATCT GGTCGCATCA GTCGCATGTT CCGTGGTGTT CGCGGCGGCG
GCGCTGGTTT GCGCCATGCG GGCCGGGCCG CATGCGGTCA ACCTCATGGC CGTGACGCTC
TCGCTCGCCA TCCTCACGTT GCATTTCACC GGCATGACAG CGCTGCGCAT CACGCCGCTG
GTTGTCCCAG GGGCATTCTC CGACCTGGCG GCACTACACA CACTTGCGCT GGCGATTGCC
GGCCTGTCGC TGGTCATCGT CTGCACCGGG CTCGTGAGCT ATCTGATCGA CAGCGATGTG
CGGGCCGAAT CACTCGAGCA TCTGCGCAGG ATGGCACTGA GTGACCTGCT GACGGGGCTG
CCGAACCGGG GCAGTTTCAA CGAGCGCCTG GATCTTGAAA TTGTGCTGGC GCGCGAGGCA
GGCACGAGAC TGGCACTCAT CGGCATTGAC CTGAACCGGT TCAAGGAAGT CAACGACCTG
CGCGGCCATC ACGCCGGCGA CGAAGTGCTG CGCATCCTCG CGCGGCGCAT GACGGGCCTG
CTGCGCGAAA ACGAATTTGT CGCGCGTATC GGCGGAGATG AATTCGCCGC GATCTGCCGG
ATGACGGGGG AGGTGACGGC CGAGGCCGGG CTGGAGGATT TTCTGGGCCG CCTCGAAGCA
GCCCTGTACA AGCCCGTCAG GCTCGATGAA TACGAAGTCG TCACGGGAGG GAGTTTCGGC
GTGGCGATCT ATCCCGACGA TGCGACCAGC AAGCCGGTTC TCATCAACAA CGCAGACCTG
GCGATGTATC GCGCAAAGAC CAGTATGACG CGGTCCGTCT GCTTTTACGA GCCGGCGATG
GACGAAATGG TGCGGGCGCG GCGCAACCTC GCCTCGGATT TGCGCGGCGC GCTGGCAGCC
ACCCAGCTCA GCATCCACTA CCAGGTGCAA ACGTCGCTGG TGACGGGCGA AACGCGGGGT
TACGAGGCGT TGCTGCGCTG GCGGCATCCG GTACAGGGAC CGATTCCACC CGCGACGTTC
ATTCCGCTTG CCGAGGAGAA CGGTCTTATC CTCGAGATCG GGGAATGGGT GCTGCGTCAG
GCCTGTGCGA TGGCCATCTC CTGGGACCCG CCATATCCGG TTGCGGTCAA CGTATCGGCC
GTCCAGTTCG CGCATGCGAA CCTGACGCAG CTCGTCGCCG GCGTGCTGGG CGAAACCGGT
CTGCCAGCGC AACGCCTGCA GCTGGAACTG ACCGAATCGA CCATCTTCGC GGACCGCGGC
CGCTCGCTGC GCACGCTGCG GCAACTCAAG GAACTGGGTG TGAGCATCGC GCTGGACGAT
TTCGGTACCG GCTATTCGTC GCTCGACACG CTGCGCTCAT TTCCCTTCGA CCGGATCAAG
CTCGACCAGT CGTTCTTCAG CGAGGCGGAA GCCAGTCCCC AGGACCGGGC CATCATCCGG
GCCGTGCTGG CGCTGGGCAA AAGCCTGGGC ATCCCCGTAC TGGCAGAAGG GATCGAGACG
CAAAGCCAGC TCGCGCTGTT GACCGAGGAA GGTTGCGACG AAGCGCAGGG CTTCCTGTTC
GGCCGCCCGG CTGCGCTGGC GGAGATCGTC GGCACTGGCC GCATCAGGCT TGTCGATACG
CGTGTCGCCC ATTCGGTGCC TGGGAAAGGG GACGCAGAGG GTATCGACAA CGGGAAGAGT
CCGGGAGCCG AACACGGGCA GACACTGGAC AGCACGACGT AA
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| Protein sequence | MVTVLGCITE KHNVWLVLVA GLLCAVGSWV TARLFQRTVG TAGMQKLGWH VLTAISAGVA
IWCTHFVAML GFDAGVPVSF DPFLTVLSLL IAVGGSTFGF ALAGSRVTRF APALGGAIVG
VAIALMHYTG MMAWRIEGII SWDVPYLVAS VACSVVFAAA ALVCAMRAGP HAVNLMAVTL
SLAILTLHFT GMTALRITPL VVPGAFSDLA ALHTLALAIA GLSLVIVCTG LVSYLIDSDV
RAESLEHLRR MALSDLLTGL PNRGSFNERL DLEIVLAREA GTRLALIGID LNRFKEVNDL
RGHHAGDEVL RILARRMTGL LRENEFVARI GGDEFAAICR MTGEVTAEAG LEDFLGRLEA
ALYKPVRLDE YEVVTGGSFG VAIYPDDATS KPVLINNADL AMYRAKTSMT RSVCFYEPAM
DEMVRARRNL ASDLRGALAA TQLSIHYQVQ TSLVTGETRG YEALLRWRHP VQGPIPPATF
IPLAEENGLI LEIGEWVLRQ ACAMAISWDP PYPVAVNVSA VQFAHANLTQ LVAGVLGETG
LPAQRLQLEL TESTIFADRG RSLRTLRQLK ELGVSIALDD FGTGYSSLDT LRSFPFDRIK
LDQSFFSEAE ASPQDRAIIR AVLALGKSLG IPVLAEGIET QSQLALLTEE GCDEAQGFLF
GRPAALAEIV GTGRIRLVDT RVAHSVPGKG DAEGIDNGKS PGAEHGQTLD STT
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